<p>(A) Number of core CDSs depending on the number of genomes sampled. (B) Number of strain-specific CDSs depending on the number of genomes sampled. (C) Pan-genome size (CDSs) depending on the number of genomes sampled. In all cases, genomes were sampled with 200 replicates. Black dots indicate the mean of the calculated values, while grey shades indicate the first and third quartile.</p
<p>Reconstruction performance when decreasing the packing density of the simulations. (A-B) For all ...
<p>We first simulated 15,000 haploid sequences (5,000 for each of an African, Asian and European pop...
<p>Simulations were performed with 50000 runs each. g, haploid size of the human genome: 3.12 x 10<s...
<p>All CDSs in the pan-genome were used for these calculations, except that repetitive CDSs such as ...
<p>Each dot represents distribution of data obtained from 10000 random permutations of strain order....
<p>(A) The distribution of CLOGs as a function of the number of assigned strains. (B) The size of th...
<p>The distribution of the number of core COGs (A) and total pan-genome COGs (B) found upon sequenti...
<p>The discovery order of genomes was permuted 100 times with the total number of genes discovered s...
<p>(A) Histogram showing the distribution of the number of strains in each OG among the 30 strains. ...
<p>The observed abundances by mapping reads to reference genomes and the expected abundance correlat...
<p>Both <i>Simulation A</i> (clustering) and <i>Simulation B</i> (differential abundance) are repres...
<p>Numerical genome comparison of the six chosen strains of <i>L</i>. <i>monocytogenes</i>.</p
<p>From outside to inside, the outer most circle shows the strain names of the <i>P</i>. <i>fluoresc...
a) Determining the number of additional genes identified at each CV threshold. The dashed red line i...
<p>X axis: the coordinate of the genome of Acinetobacter baumannii ATCC 17978. Each interval contain...
<p>Reconstruction performance when decreasing the packing density of the simulations. (A-B) For all ...
<p>We first simulated 15,000 haploid sequences (5,000 for each of an African, Asian and European pop...
<p>Simulations were performed with 50000 runs each. g, haploid size of the human genome: 3.12 x 10<s...
<p>All CDSs in the pan-genome were used for these calculations, except that repetitive CDSs such as ...
<p>Each dot represents distribution of data obtained from 10000 random permutations of strain order....
<p>(A) The distribution of CLOGs as a function of the number of assigned strains. (B) The size of th...
<p>The distribution of the number of core COGs (A) and total pan-genome COGs (B) found upon sequenti...
<p>The discovery order of genomes was permuted 100 times with the total number of genes discovered s...
<p>(A) Histogram showing the distribution of the number of strains in each OG among the 30 strains. ...
<p>The observed abundances by mapping reads to reference genomes and the expected abundance correlat...
<p>Both <i>Simulation A</i> (clustering) and <i>Simulation B</i> (differential abundance) are repres...
<p>Numerical genome comparison of the six chosen strains of <i>L</i>. <i>monocytogenes</i>.</p
<p>From outside to inside, the outer most circle shows the strain names of the <i>P</i>. <i>fluoresc...
a) Determining the number of additional genes identified at each CV threshold. The dashed red line i...
<p>X axis: the coordinate of the genome of Acinetobacter baumannii ATCC 17978. Each interval contain...
<p>Reconstruction performance when decreasing the packing density of the simulations. (A-B) For all ...
<p>We first simulated 15,000 haploid sequences (5,000 for each of an African, Asian and European pop...
<p>Simulations were performed with 50000 runs each. g, haploid size of the human genome: 3.12 x 10<s...