Differences in simulation packing densities.

<p>Reconstruction performance when decreasing the packing density of the simulations. (A-B) For all positions across the simulations, the proportion of directly adjacent spaces that are occupied for the new (blue) and original (red) simulations respectively. The distribution is left shifted for the new simulations compared to the original and the median number of occupied spaces is reduced reflecting a decrease in density. (C) Genome wide performance of the reconstruction algorithm for the new (triangles) and original (circles) simulations in terms of precision and recall given the number of colors in the probe design.