Figure S6. Variation of model parameters does not lead to large changes in the resulting configurations. (PDF 93 kb
Figure S8. H3K36me3 distribution on bidirectional gene with different intergenic region in H1 ES cel...
Figure S1. CRISPR data overview and quality assessment. Figure S2. Structural rearrangements associa...
Epigenetic landscapes and chromatin dynamics of the Drosophila chromosomes. “Virtual 3C” were obtain...
Figure S5. Simulation results show good agreement with fluorescence in situ hybridization measuremen...
Figure S1. Chromatin is modeled as a bead-and-spring polymer; schematic diagram describing the model...
Figure S10. ChIP-seq and DNase-seq data from mES cells can also be used as input. (PDF 136 kb
Figure S9. Simulations predict the effect of protein knock-outs on the β globin locus. (PDF 553 kb
Figure S7. ChIP-seq and DNase-seq data are used as input to a model of the β globin locus. (PDF 309...
Supplementary Methods. Further details of the simulation scheme; full details of the ChIP-seq, DNase...
Genome-wide predictions of cis-regulatory regions for all six cell types. (ZIP 20400 kb
This file contains supplemental Tables S1-S7, and supplemental Figures S1-S30. (PDF 27600 kb
Nine examples of fits of the unconstrained chromatin model [eqs. 1 and 2 ] on « Virtual 3C » data ob...
Genomic maps of the TADs investigated in the present study. (a) Map of the TADs containing the loci ...
Gene Ontology (GO) analysis of differentially expressed genes in the stepwise tumorigenesis system. ...
Sequence length distribution of regions between BNG conflicts of final Mmur 3.0 assembly. Sequences ...
Figure S8. H3K36me3 distribution on bidirectional gene with different intergenic region in H1 ES cel...
Figure S1. CRISPR data overview and quality assessment. Figure S2. Structural rearrangements associa...
Epigenetic landscapes and chromatin dynamics of the Drosophila chromosomes. “Virtual 3C” were obtain...
Figure S5. Simulation results show good agreement with fluorescence in situ hybridization measuremen...
Figure S1. Chromatin is modeled as a bead-and-spring polymer; schematic diagram describing the model...
Figure S10. ChIP-seq and DNase-seq data from mES cells can also be used as input. (PDF 136 kb
Figure S9. Simulations predict the effect of protein knock-outs on the β globin locus. (PDF 553 kb
Figure S7. ChIP-seq and DNase-seq data are used as input to a model of the β globin locus. (PDF 309...
Supplementary Methods. Further details of the simulation scheme; full details of the ChIP-seq, DNase...
Genome-wide predictions of cis-regulatory regions for all six cell types. (ZIP 20400 kb
This file contains supplemental Tables S1-S7, and supplemental Figures S1-S30. (PDF 27600 kb
Nine examples of fits of the unconstrained chromatin model [eqs. 1 and 2 ] on « Virtual 3C » data ob...
Genomic maps of the TADs investigated in the present study. (a) Map of the TADs containing the loci ...
Gene Ontology (GO) analysis of differentially expressed genes in the stepwise tumorigenesis system. ...
Sequence length distribution of regions between BNG conflicts of final Mmur 3.0 assembly. Sequences ...
Figure S8. H3K36me3 distribution on bidirectional gene with different intergenic region in H1 ES cel...
Figure S1. CRISPR data overview and quality assessment. Figure S2. Structural rearrangements associa...
Epigenetic landscapes and chromatin dynamics of the Drosophila chromosomes. “Virtual 3C” were obtain...
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