Gene Ontology (GO) analysis of differentially expressed genes in the stepwise tumorigenesis system. a Functional clustering by biological pathway using DAVID for each set of co-regulated genes (pathways i to vii). b Disease-related GO (DAVID) of differentially expressed genes. The x-axis (p value) is given as − log(p value). Illustrated GO terms have p value <0.05. (PDF 2.96 mb
Figure S4. Connectivity in the map between the 25 most frequently mutated genes and pathways. Simila...
Table S8. CDGs associated with significant genome-wide expression changes in one cancer type. Up-reg...
Directed acyclic graph of biological process of the dysregulated genes. The diagram represents the e...
Gene ontology of molecular function. Gene ontology (GO) pie diagram of >2-fold differentially expres...
Biplots of dysregulated genes with interacting dysregulated miRNAs and differential methylation. A B...
This file includes: detailed information from data used, including statistical information of reads ...
Table S1. List of differentially expressed genes with transcriptional regulation. Table S2. Gene Ont...
Gene set enrichment analysis of SRP016568. The file contains an XLSX spreadsheet summarizing the top...
Text S1. Details with some modified steps for identifying EDGs.; Results of MDGs in LGG; Results fro...
This file includes: a distribution of normalized compartment scores per chromosome (Figure S1), gene...
Figure S5. Gene Ontology analysis of genes correlated with B3GALNT2. a Biological process enrichment...
Supporting figures. Figure S1. Hierarchical structures of the GM12878 TFs network. Figure S2. Percen...
Table S7. Chromatin regulators dysregulated by IDH1 and CIC in LGG. |Ti| is number of tumor types wh...
Figure S1. The directed acyclic subgraph of the human cell hierarchical taxonomy graph. Figure S2 Th...
Figure S2. Significance of overlap between genome-wide up/down-regulation and hyper/hypo-methylation...
Figure S4. Connectivity in the map between the 25 most frequently mutated genes and pathways. Simila...
Table S8. CDGs associated with significant genome-wide expression changes in one cancer type. Up-reg...
Directed acyclic graph of biological process of the dysregulated genes. The diagram represents the e...
Gene ontology of molecular function. Gene ontology (GO) pie diagram of >2-fold differentially expres...
Biplots of dysregulated genes with interacting dysregulated miRNAs and differential methylation. A B...
This file includes: detailed information from data used, including statistical information of reads ...
Table S1. List of differentially expressed genes with transcriptional regulation. Table S2. Gene Ont...
Gene set enrichment analysis of SRP016568. The file contains an XLSX spreadsheet summarizing the top...
Text S1. Details with some modified steps for identifying EDGs.; Results of MDGs in LGG; Results fro...
This file includes: a distribution of normalized compartment scores per chromosome (Figure S1), gene...
Figure S5. Gene Ontology analysis of genes correlated with B3GALNT2. a Biological process enrichment...
Supporting figures. Figure S1. Hierarchical structures of the GM12878 TFs network. Figure S2. Percen...
Table S7. Chromatin regulators dysregulated by IDH1 and CIC in LGG. |Ti| is number of tumor types wh...
Figure S1. The directed acyclic subgraph of the human cell hierarchical taxonomy graph. Figure S2 Th...
Figure S2. Significance of overlap between genome-wide up/down-regulation and hyper/hypo-methylation...
Figure S4. Connectivity in the map between the 25 most frequently mutated genes and pathways. Simila...
Table S8. CDGs associated with significant genome-wide expression changes in one cancer type. Up-reg...
Directed acyclic graph of biological process of the dysregulated genes. The diagram represents the e...