Directed acyclic graph of biological process of the dysregulated genes. The diagram represents the enriched GO sets containing at least 5 genes with a hypergeometric p-value less than 0.00001 (in red). (TIF 4339 kb
Table S1. KEGG pathway analysis for genes upregulated in ID8-KRAS-3D cells compared to ID8-3D cells....
Table S3. Top pathway enrichment and the specific genes involved. Enrichment analysis was performed ...
Biological process and cellular component annotation of the 80 genes associated with HCC development...
Figure S5. Gene Ontology analysis of genes correlated with B3GALNT2. a Biological process enrichment...
Gene Ontology (GO) analysis of differentially expressed genes in the stepwise tumorigenesis system. ...
Protein/gene-protein/gene interaction network of the 27 genes that were stably and consistently dysr...
The GO analysis of biological process of genes which were upregulated between LOXL2 vs Control and C...
Figure S4. Connectivity in the map between the 25 most frequently mutated genes and pathways. Simila...
Methods and Figures. Figure S1. Phenotypic and molecular characteristics of HCC cell lines. Figure S...
Figure S5. Connectivity in the map between the 25 most frequently mutated genes and hallmarks. Simil...
Mutated genes involved in the PI3K, RAS, apoptosis, and NOTCH pathways. The heatmaps show the distri...
Figure S3. The mRNA expression and the fold change of the hub genes. (A) the mRNA expression of hub ...
Table S4. Consistent genes in all four human HCC datasets analysed in this study. These are the gene...
HuH6 ± Dox and HuH6shCTNNB1 ± Dox growth rates in 384-well plate. Parental HuH6 and HuH6shCTNNB1 wer...
Figure S3. Connectivity in the map between genes and hallmarks. The heatmap indicates the membership...
Table S1. KEGG pathway analysis for genes upregulated in ID8-KRAS-3D cells compared to ID8-3D cells....
Table S3. Top pathway enrichment and the specific genes involved. Enrichment analysis was performed ...
Biological process and cellular component annotation of the 80 genes associated with HCC development...
Figure S5. Gene Ontology analysis of genes correlated with B3GALNT2. a Biological process enrichment...
Gene Ontology (GO) analysis of differentially expressed genes in the stepwise tumorigenesis system. ...
Protein/gene-protein/gene interaction network of the 27 genes that were stably and consistently dysr...
The GO analysis of biological process of genes which were upregulated between LOXL2 vs Control and C...
Figure S4. Connectivity in the map between the 25 most frequently mutated genes and pathways. Simila...
Methods and Figures. Figure S1. Phenotypic and molecular characteristics of HCC cell lines. Figure S...
Figure S5. Connectivity in the map between the 25 most frequently mutated genes and hallmarks. Simil...
Mutated genes involved in the PI3K, RAS, apoptosis, and NOTCH pathways. The heatmaps show the distri...
Figure S3. The mRNA expression and the fold change of the hub genes. (A) the mRNA expression of hub ...
Table S4. Consistent genes in all four human HCC datasets analysed in this study. These are the gene...
HuH6 ± Dox and HuH6shCTNNB1 ± Dox growth rates in 384-well plate. Parental HuH6 and HuH6shCTNNB1 wer...
Figure S3. Connectivity in the map between genes and hallmarks. The heatmap indicates the membership...
Table S1. KEGG pathway analysis for genes upregulated in ID8-KRAS-3D cells compared to ID8-3D cells....
Table S3. Top pathway enrichment and the specific genes involved. Enrichment analysis was performed ...
Biological process and cellular component annotation of the 80 genes associated with HCC development...
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