This file includes: detailed information from data used, including statistical information of reads and mapping process in RNA-seq and Hi-C analysis (Table S1-S4), gene expression values from heatmap in Additional file 2: Figure S4 (Table S5), gene ontology analysis detailed results (Table S6-S9). (XLSX 85 kb
Table S1.The clinical features of the patients. Table S2. Clinical features of the patients from TCG...
Table S2. Genes found to be differentially expressed in multiple studies included in scenario 1 (inv...
Outline of the process for integrating and visualizing analysis of gene signature and ontology enric...
This file includes: a distribution of normalized compartment scores per chromosome (Figure S1), gene...
Number of transcripts and genes in B cells, U-CLL and M-CLL. Pair wise scatter plot matrix. (DOCX 14...
Table of samples, providing histopathological and molecular subtypes. (XLSX 41 kb
Table S1. List of the relative abundance of all histone peptides. Table S2. List of the relative abu...
Differentially expressed genes after BMP4 treatment in T-47D cell line. Ensembl IDs, read counts, fo...
Results of the Gene Ontology Process enrichment analysis of the 300 top-ranked DE genes and the list...
A table listing the gene ontology terms of differentially expressed genes between MCF-10A and MCF-7 ...
ARSI correlation and statistics summary. Table S2. Meiotic cell cycle correlation summary. Table S3....
Table S1. Clinical data of TCGA patients. The data was updated with the available follow up informat...
Gene Ontology (GO) analysis of differentially expressed genes in the stepwise tumorigenesis system. ...
The two ovarian cancer gene expression datasets we used in the second set of experiments. (DOC 27 kb
Figure S1. The distribution of lncRNAs and PC gene expression and DNA methylation levels across samp...
Table S1.The clinical features of the patients. Table S2. Clinical features of the patients from TCG...
Table S2. Genes found to be differentially expressed in multiple studies included in scenario 1 (inv...
Outline of the process for integrating and visualizing analysis of gene signature and ontology enric...
This file includes: a distribution of normalized compartment scores per chromosome (Figure S1), gene...
Number of transcripts and genes in B cells, U-CLL and M-CLL. Pair wise scatter plot matrix. (DOCX 14...
Table of samples, providing histopathological and molecular subtypes. (XLSX 41 kb
Table S1. List of the relative abundance of all histone peptides. Table S2. List of the relative abu...
Differentially expressed genes after BMP4 treatment in T-47D cell line. Ensembl IDs, read counts, fo...
Results of the Gene Ontology Process enrichment analysis of the 300 top-ranked DE genes and the list...
A table listing the gene ontology terms of differentially expressed genes between MCF-10A and MCF-7 ...
ARSI correlation and statistics summary. Table S2. Meiotic cell cycle correlation summary. Table S3....
Table S1. Clinical data of TCGA patients. The data was updated with the available follow up informat...
Gene Ontology (GO) analysis of differentially expressed genes in the stepwise tumorigenesis system. ...
The two ovarian cancer gene expression datasets we used in the second set of experiments. (DOC 27 kb
Figure S1. The distribution of lncRNAs and PC gene expression and DNA methylation levels across samp...
Table S1.The clinical features of the patients. Table S2. Clinical features of the patients from TCG...
Table S2. Genes found to be differentially expressed in multiple studies included in scenario 1 (inv...
Outline of the process for integrating and visualizing analysis of gene signature and ontology enric...