Figure S5. Simulation results show good agreement with fluorescence in situ hybridization measurements. (PDF 94 kb
Genome-wide predictions of cis-regulatory regions for all six cell types. (ZIP 20400 kb
Epigenetic landscapes and chromatin dynamics of the Drosophila chromosomes. “Virtual 3C” were obtain...
This file contains supplemental Tables S1-S7, and supplemental Figures S1-S30. (PDF 27600 kb
Figure S6. Variation of model parameters does not lead to large changes in the resulting configurati...
Figure S10. ChIP-seq and DNase-seq data from mES cells can also be used as input. (PDF 136 kb
Figure S1. Chromatin is modeled as a bead-and-spring polymer; schematic diagram describing the model...
Figure S9. Simulations predict the effect of protein knock-outs on the β globin locus. (PDF 553 kb
Supplementary Methods. Further details of the simulation scheme; full details of the ChIP-seq, DNase...
Figure S7. ChIP-seq and DNase-seq data are used as input to a model of the β globin locus. (PDF 309...
Figure showing reproducibility of fluorescence for sorting replicates. (PDF 274Â kb
Genomic maps of the TADs investigated in the present study. (a) Map of the TADs containing the loci ...
Figure S3. H3K4me3 distribution on bidirectional gene with different intergenic distances in H1 ES c...
Nine examples of fits of the unconstrained chromatin model [eqs. 1 and 2 ] on « Virtual 3C » data ob...
The three-dimensional organisation of chromosomes can be probed using methods such as Capture-C. How...
The three-dimensional organisation of chromosomes can be probed using methods such as Capture-C. How...
Genome-wide predictions of cis-regulatory regions for all six cell types. (ZIP 20400 kb
Epigenetic landscapes and chromatin dynamics of the Drosophila chromosomes. “Virtual 3C” were obtain...
This file contains supplemental Tables S1-S7, and supplemental Figures S1-S30. (PDF 27600 kb
Figure S6. Variation of model parameters does not lead to large changes in the resulting configurati...
Figure S10. ChIP-seq and DNase-seq data from mES cells can also be used as input. (PDF 136 kb
Figure S1. Chromatin is modeled as a bead-and-spring polymer; schematic diagram describing the model...
Figure S9. Simulations predict the effect of protein knock-outs on the β globin locus. (PDF 553 kb
Supplementary Methods. Further details of the simulation scheme; full details of the ChIP-seq, DNase...
Figure S7. ChIP-seq and DNase-seq data are used as input to a model of the β globin locus. (PDF 309...
Figure showing reproducibility of fluorescence for sorting replicates. (PDF 274Â kb
Genomic maps of the TADs investigated in the present study. (a) Map of the TADs containing the loci ...
Figure S3. H3K4me3 distribution on bidirectional gene with different intergenic distances in H1 ES c...
Nine examples of fits of the unconstrained chromatin model [eqs. 1 and 2 ] on « Virtual 3C » data ob...
The three-dimensional organisation of chromosomes can be probed using methods such as Capture-C. How...
The three-dimensional organisation of chromosomes can be probed using methods such as Capture-C. How...
Genome-wide predictions of cis-regulatory regions for all six cell types. (ZIP 20400 kb
Epigenetic landscapes and chromatin dynamics of the Drosophila chromosomes. “Virtual 3C” were obtain...
This file contains supplemental Tables S1-S7, and supplemental Figures S1-S30. (PDF 27600 kb
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