Additional file 10: Table S3. of SNP- and haplotype-based genome-wide association studies for growth, carcass, and meat quality traits in a Duroc multigenerational population

Additional file 4: of Genome-wide association analysis of stalk biomass and anatomical traits in maize

Mona Mazaheri (3995609)
Marlies Heckwolf (3995618)
Brieanne Vaillancourt (108028)
Joseph Gage (3879919)
Brett Burdo (6286337)
Sven Heckwolf (6286340)
Kerrie Barry (276529)
Anna Lipzen (194340)
Camila Ribeiro (6286343)
Thomas Kono (448008)
Heidi Kaeppler (3995606)
Edgar Spalding (3879922)
Candice Hirsch (6286346)
C. Robin Buell (108039)
Natalia Leon (3995600)
Shawn Kaeppler (524084)

February 2019

LD plots of genomic regions containing significant SNPs and adjacent candidate genes. Significant SN...

Additional file 1 of Associations of genome-wide structural variations with phenotypic differences in cross-bred Eurasian pigs

Wencheng Zong (8025542)
Jinbu Wang (2359150)
Runze Zhao (3401315)
Naiqi Niu (17112914)
Yanfang Su (706280)
Ziping Hu (17112917)
Xin Liu (43569)
Xinhua Hou (108350)
Ligang Wang (347845)
Lixian Wang (465239)
Longchao Zhang (10736706)

October 2023

Additional file 1: Table S1. Sample information. Table S2. TE reference sequence. Table S3. Primers ...

Additional file 10: of Identification of five novel genetic loci related to facial morphology by genome-wide association studies

Seongwon Cha (107939)
Ji Lim (3437312)
Ah Park (5424596)
Jun-Hyeong Do (5424599)
Si Lee (3777076)
Chol Shin (468586)
Nam Cho (3440081)
Ji-One Kang (844616)
Jeong Nam (5424605)
Jong-Sik Kim (5424602)
Kwang-Man Woo (5424608)
Seung-Hwan Lee (231008)
Jong Kim (234077)
Bermseok Oh (39719)

June 2018

Table S7. Additional associated facial traits of five novel SNPs in the discovery GWAS (Pâ<â0.00...

Additional file 3: Figure S2. of SNP- and haplotype-based genome-wide association studies for growth, carcass, and meat quality traits in a Duroc multigenerational population

Shuji Sato (275645)
Yoshinobu Uemoto (3421973)
Takashi Kikuchi (1510180)
Sachiko Egawa (3485546)
Kimiko Kohira (3485555)
Tomomi Saito (768044)
Hironori Sakuma (3485552)
Satoshi Miyashita (3485558)
Shinji Arata (3485549)
Takatoshi Kojima (787343)
Keiichi Suzuki (3485561)

April 2016

Average linkage disequilibrium coefficient (r2) values plotted against intermarker distance for all ...

Additional file 8: Figure S6. of SNP- and haplotype-based genome-wide association studies for growth, carcass, and meat quality traits in a Duroc multigenerational population

Shuji Sato (275645)
Yoshinobu Uemoto (3421973)
Takashi Kikuchi (1510180)
Sachiko Egawa (3485546)
Kimiko Kohira (3485555)
Tomomi Saito (768044)
Hironori Sakuma (3485552)
Satoshi Miyashita (3485558)
Shinji Arata (3485549)
Takatoshi Kojima (787343)
Keiichi Suzuki (3485561)

April 2016

Linkage disequilibrium (LD) of the significant region on chromosome 7. (PDF 415 kb

Additional file 1: of A genome wide association study for the number of animals born dead in domestic pigs

Pingxian Wu (5074019)
Kai Wang (21246)
Jie Zhou (28945)
Qiang Yang (135832)
Xidi Yang (6183518)
Anan Jiang (3988364)
Yanzhi Jiang (785400)
Mingzhou Li (112100)
Li Zhu (67404)
Lin Bai (338207)
Xuewei Li (112102)
Guoqing Tang (785399)

January 2019

Table S1. Summary of significant chromosome regions including genomic level (0.05/N) for NM in Landr...

Additional file 3: of Sliding window haplotype approaches overcome single SNP analysis limitations in identifying genes for meat tenderness in Nelore cattle

Camila Braz (6206237)
Jeremy Taylor (2547346)
Tiago Bresolin (3160125)
Rafael Espigolan (3160104)
Fabieli Feitosa (3508652)
Roberto Carvalheiro (523642)
Fernando Baldi (2833280)
Lucia Albuquerque (3577211)
Henrique Oliveira (4007828)

January 2019

Manhattan plots for haplotype-based association analyses for each number of alleles at haplotyped lo...

Additional file 1: of Genome wide association study identifies SNPs associated with fatty acid composition in Chinese Wagyu cattle

Zezhao Wang (4111030)
Bo Zhu (118038)
Hong Niu (2637253)
Wengang Zhang (3594995)
Ling Xu (117663)
Lei Xu (78676)
Yan Chen (4308)
Lupei Zhang (647384)
Xue Gao (237216)
Huijiang Gao (628320)
Shengli Zhang (110370)
Lingyang Xu (389143)
Junya Li (240083)

March 2019

Table S1. Estimates of phenotypic correlations (upper diagonals) and genetic correlation (lower diag...

Additional file 2: Table S1. of Genome-wide association study for female fertility in Nordic Red cattle

Johanna Höglund (3512930)
Bart Buitenhuis (3404813)
Bernt Guldbrandtsen (340532)
Mogens Lund (3512933)
Goutam Sahana (126076)

September 2015

SNPs significantly associated with Fertility index in the Nordic Red Cattle. A genome wide associati...

Additional file 1: Table S1âS3. of Exploring evidence of positive selection reveals genetic basis of meat quality traits in Berkshire pigs through whole genome sequencing

Hyeonsoo Jeong (3460376)
Ki-Duk Song (673013)
Minseok Seo (316795)
Kelsey Caetano-AnollĂŠs (3460385)
Jaemin Kim (386282)
Woori Kwak (425016)
Jae-don Oh (3460373)
EuiSoo Kim (3460382)
Dong Jeong (3460379)
Seoae Cho (75685)
Heebal Kim (9991)
Hak-Kyo Lee (540982)

August 2015

The result summary of sequence reads mapping using Bowtie2. Table S4. List of candidate genes result...

Additional file 4: of Sliding window haplotype approaches overcome single SNP analysis limitations in identifying genes for meat tenderness in Nelore cattle

Camila Braz (6206237)
Jeremy Taylor (2547346)
Tiago Bresolin (3160125)
Rafael Espigolan (3160104)
Fabieli Feitosa (3508652)
Roberto Carvalheiro (523642)
Fernando Baldi (2833280)
Lucia Albuquerque (3577211)
Henrique Oliveira (4007828)

January 2019

QQ plots for haplotype-based association analyses for each number of alleles at haplotyped loci. (PD...

Additional file 3: Table S1. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Excel file describing highly significant SNPs (genome-wise FDR ≤ 5 %, FDR ≤ 1% and genome-wise Bonfe...

Additional file 1: Table S1. of Genome-wide association study dissects genetic architecture underlying longitudinal egg weights in chickens

Guoqiang Yi (489551)
Manman Shen (3151977)
Jingwei Yuan (791540)
Congjiao Sun (617470)
Zhongyi Duan (760043)
Liang Qu (651440)
Taocun Dou (817624)
Meng Ma (2075878)
Jian Lu (51707)
Jun Guo (85069)
Sirui Chen (192925)
Lujiang Qu (114956)
Kehua Wang (535422)
Ning Yang (114965)

October 2015

Summary of genome-wide significant SNPs with respect to nine egg weights by univariate GWAS. Table S...

Additional file 9: of Single SNP- and pathway-based genome-wide association studies for beak deformity in chickens using high-density 600K SNP arrays

Hao Bai (555291)
Yanyan Sun (351971)
Nian Liu (29935)
Fuguang Xue (3506771)
Yunlei Li (3168603)
Songshan Xu (5467700)
Jianhua Ye (5467697)
Lei Zhang (38117)
Yu Chen (4211599)
Jilan Chen (329299)

June 2018

Table S5. The detailed lists of pathways and SNPs information used in the pathway-based association ...

Additional file 7: of Single SNP- and pathway-based genome-wide association studies for beak deformity in chickens using high-density 600K SNP arrays

Hao Bai (555291)
Yanyan Sun (351971)
Nian Liu (29935)
Fuguang Xue (3506771)
Yunlei Li (3168603)
Songshan Xu (5467700)
Jianhua Ye (5467697)
Lei Zhang (38117)
Yu Chen (4211599)
Jilan Chen (329299)

June 2018

Table S3. The detailed information of each pathway based on the pathway-based association analysis. ...

Additional file 4: of Genome-wide association analysis of stalk biomass and anatomical traits in maize

Mona Mazaheri (3995609)
Marlies Heckwolf (3995618)
Brieanne Vaillancourt (108028)
Joseph Gage (3879919)
Brett Burdo (6286337)
Sven Heckwolf (6286340)
Kerrie Barry (276529)
Anna Lipzen (194340)
Camila Ribeiro (6286343)
Thomas Kono (448008)
Heidi Kaeppler (3995606)
Edgar Spalding (3879922)
Candice Hirsch (6286346)
C. Robin Buell (108039)
Natalia Leon (3995600)
Shawn Kaeppler (524084)

February 2019

LD plots of genomic regions containing significant SNPs and adjacent candidate genes. Significant SN...

Additional file 1 of Associations of genome-wide structural variations with phenotypic differences in cross-bred Eurasian pigs

Wencheng Zong (8025542)
Jinbu Wang (2359150)
Runze Zhao (3401315)
Naiqi Niu (17112914)
Yanfang Su (706280)
Ziping Hu (17112917)
Xin Liu (43569)
Xinhua Hou (108350)
Ligang Wang (347845)
Lixian Wang (465239)
Longchao Zhang (10736706)

October 2023

Additional file 1: Table S1. Sample information. Table S2. TE reference sequence. Table S3. Primers ...

Additional file 10: of Identification of five novel genetic loci related to facial morphology by genome-wide association studies

Seongwon Cha (107939)
Ji Lim (3437312)
Ah Park (5424596)
Jun-Hyeong Do (5424599)
Si Lee (3777076)
Chol Shin (468586)
Nam Cho (3440081)
Ji-One Kang (844616)
Jeong Nam (5424605)
Jong-Sik Kim (5424602)
Kwang-Man Woo (5424608)
Seung-Hwan Lee (231008)
Jong Kim (234077)
Bermseok Oh (39719)

June 2018

Table S7. Additional associated facial traits of five novel SNPs in the discovery GWAS (Pâ<â0.00...

Additional file 3: Figure S2. of SNP- and haplotype-based genome-wide association studies for growth, carcass, and meat quality traits in a Duroc multigenerational population

Shuji Sato (275645)
Yoshinobu Uemoto (3421973)
Takashi Kikuchi (1510180)
Sachiko Egawa (3485546)
Kimiko Kohira (3485555)
Tomomi Saito (768044)
Hironori Sakuma (3485552)
Satoshi Miyashita (3485558)
Shinji Arata (3485549)
Takatoshi Kojima (787343)
Keiichi Suzuki (3485561)

April 2016

Average linkage disequilibrium coefficient (r2) values plotted against intermarker distance for all ...

Additional file 8: Figure S6. of SNP- and haplotype-based genome-wide association studies for growth, carcass, and meat quality traits in a Duroc multigenerational population

Shuji Sato (275645)
Yoshinobu Uemoto (3421973)
Takashi Kikuchi (1510180)
Sachiko Egawa (3485546)
Kimiko Kohira (3485555)
Tomomi Saito (768044)
Hironori Sakuma (3485552)
Satoshi Miyashita (3485558)
Shinji Arata (3485549)
Takatoshi Kojima (787343)
Keiichi Suzuki (3485561)

April 2016

Linkage disequilibrium (LD) of the significant region on chromosome 7. (PDF 415 kb

Additional file 1: of A genome wide association study for the number of animals born dead in domestic pigs

Pingxian Wu (5074019)
Kai Wang (21246)
Jie Zhou (28945)
Qiang Yang (135832)
Xidi Yang (6183518)
Anan Jiang (3988364)
Yanzhi Jiang (785400)
Mingzhou Li (112100)
Li Zhu (67404)
Lin Bai (338207)
Xuewei Li (112102)
Guoqing Tang (785399)

January 2019

Table S1. Summary of significant chromosome regions including genomic level (0.05/N) for NM in Landr...

Additional file 3: of Sliding window haplotype approaches overcome single SNP analysis limitations in identifying genes for meat tenderness in Nelore cattle

Camila Braz (6206237)
Jeremy Taylor (2547346)
Tiago Bresolin (3160125)
Rafael Espigolan (3160104)
Fabieli Feitosa (3508652)
Roberto Carvalheiro (523642)
Fernando Baldi (2833280)
Lucia Albuquerque (3577211)
Henrique Oliveira (4007828)

January 2019

Manhattan plots for haplotype-based association analyses for each number of alleles at haplotyped lo...

Additional file 1: of Genome wide association study identifies SNPs associated with fatty acid composition in Chinese Wagyu cattle

Zezhao Wang (4111030)
Bo Zhu (118038)
Hong Niu (2637253)
Wengang Zhang (3594995)
Ling Xu (117663)
Lei Xu (78676)
Yan Chen (4308)
Lupei Zhang (647384)
Xue Gao (237216)
Huijiang Gao (628320)
Shengli Zhang (110370)
Lingyang Xu (389143)
Junya Li (240083)

March 2019

Table S1. Estimates of phenotypic correlations (upper diagonals) and genetic correlation (lower diag...

Additional file 2: Table S1. of Genome-wide association study for female fertility in Nordic Red cattle

Johanna Höglund (3512930)
Bart Buitenhuis (3404813)
Bernt Guldbrandtsen (340532)
Mogens Lund (3512933)
Goutam Sahana (126076)

September 2015

SNPs significantly associated with Fertility index in the Nordic Red Cattle. A genome wide associati...

Additional file 1: Table S1âS3. of Exploring evidence of positive selection reveals genetic basis of meat quality traits in Berkshire pigs through whole genome sequencing

Hyeonsoo Jeong (3460376)
Ki-Duk Song (673013)
Minseok Seo (316795)
Kelsey Caetano-AnollĂŠs (3460385)
Jaemin Kim (386282)
Woori Kwak (425016)
Jae-don Oh (3460373)
EuiSoo Kim (3460382)
Dong Jeong (3460379)
Seoae Cho (75685)
Heebal Kim (9991)
Hak-Kyo Lee (540982)

August 2015

The result summary of sequence reads mapping using Bowtie2. Table S4. List of candidate genes result...

Additional file 4: of Sliding window haplotype approaches overcome single SNP analysis limitations in identifying genes for meat tenderness in Nelore cattle

Camila Braz (6206237)
Jeremy Taylor (2547346)
Tiago Bresolin (3160125)
Rafael Espigolan (3160104)
Fabieli Feitosa (3508652)
Roberto Carvalheiro (523642)
Fernando Baldi (2833280)
Lucia Albuquerque (3577211)
Henrique Oliveira (4007828)

January 2019

QQ plots for haplotype-based association analyses for each number of alleles at haplotyped loci. (PD...

Additional file 3: Table S1. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Excel file describing highly significant SNPs (genome-wise FDR ≤ 5 %, FDR ≤ 1% and genome-wise Bonfe...

Additional file 1: Table S1. of Genome-wide association study dissects genetic architecture underlying longitudinal egg weights in chickens

Guoqiang Yi (489551)
Manman Shen (3151977)
Jingwei Yuan (791540)
Congjiao Sun (617470)
Zhongyi Duan (760043)
Liang Qu (651440)
Taocun Dou (817624)
Meng Ma (2075878)
Jian Lu (51707)
Jun Guo (85069)
Sirui Chen (192925)
Lujiang Qu (114956)
Kehua Wang (535422)
Ning Yang (114965)

October 2015

Summary of genome-wide significant SNPs with respect to nine egg weights by univariate GWAS. Table S...

Additional file 9: of Single SNP- and pathway-based genome-wide association studies for beak deformity in chickens using high-density 600K SNP arrays

Hao Bai (555291)
Yanyan Sun (351971)
Nian Liu (29935)
Fuguang Xue (3506771)
Yunlei Li (3168603)
Songshan Xu (5467700)
Jianhua Ye (5467697)
Lei Zhang (38117)
Yu Chen (4211599)
Jilan Chen (329299)

June 2018

Table S5. The detailed lists of pathways and SNPs information used in the pathway-based association ...

Additional file 7: of Single SNP- and pathway-based genome-wide association studies for beak deformity in chickens using high-density 600K SNP arrays

Hao Bai (555291)
Yanyan Sun (351971)
Nian Liu (29935)
Fuguang Xue (3506771)
Yunlei Li (3168603)
Songshan Xu (5467700)
Jianhua Ye (5467697)
Lei Zhang (38117)
Yu Chen (4211599)
Jilan Chen (329299)

June 2018

Table S3. The detailed information of each pathway based on the pathway-based association analysis. ...

Additional file 4: of Genome-wide association analysis of stalk biomass and anatomical traits in maize

Mona Mazaheri (3995609)
Marlies Heckwolf (3995618)
Brieanne Vaillancourt (108028)
Joseph Gage (3879919)
Brett Burdo (6286337)
Sven Heckwolf (6286340)
Kerrie Barry (276529)
Anna Lipzen (194340)
Camila Ribeiro (6286343)
Thomas Kono (448008)
Heidi Kaeppler (3995606)
Edgar Spalding (3879922)
Candice Hirsch (6286346)
C. Robin Buell (108039)
Natalia Leon (3995600)
Shawn Kaeppler (524084)

February 2019

LD plots of genomic regions containing significant SNPs and adjacent candidate genes. Significant SN...

Additional file 1 of Associations of genome-wide structural variations with phenotypic differences in cross-bred Eurasian pigs

Wencheng Zong (8025542)
Jinbu Wang (2359150)
Runze Zhao (3401315)
Naiqi Niu (17112914)
Yanfang Su (706280)
Ziping Hu (17112917)
Xin Liu (43569)
Xinhua Hou (108350)
Ligang Wang (347845)
Lixian Wang (465239)
Longchao Zhang (10736706)

October 2023

Additional file 1: Table S1. Sample information. Table S2. TE reference sequence. Table S3. Primers ...

Additional file 10: of Identification of five novel genetic loci related to facial morphology by genome-wide association studies

Seongwon Cha (107939)
Ji Lim (3437312)
Ah Park (5424596)
Jun-Hyeong Do (5424599)
Si Lee (3777076)
Chol Shin (468586)
Nam Cho (3440081)
Ji-One Kang (844616)
Jeong Nam (5424605)
Jong-Sik Kim (5424602)
Kwang-Man Woo (5424608)
Seung-Hwan Lee (231008)
Jong Kim (234077)
Bermseok Oh (39719)

June 2018

Table S7. Additional associated facial traits of five novel SNPs in the discovery GWAS (Pâ<â0.00...

Additional file 10: Table S3. of SNP- and haplotype-based genome-wide association studies for growth, carcass, and meat quality traits in a Duroc multigenerational population

Abstract

Extracted data

Additional file 10: Table S3. of SNP- and haplotype-based genome-wide association studies for growth, carcass, and meat quality traits in a Duroc multigenerational population

Abstract

Extracted data

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