<p>(<b>A</b>) Oligonucleotide sets used in ChIP assay for various regions of the <i>gTlr9</i> gene are marked in Roman numerals. TSS, transcription start site; UTR, 3’ untranslated region. Occupancy of total Pol II (<b>B</b>), Pol II-CTD-Ser2 phosphorylated (Ser2-P) (<b>C</b>), and Pol II-CTD-Ser5 phosphorylated (Ser5-P) (<b>D</b>) on the <i>gTlr9</i> gene. Results are presented as the mean of triplicate samples. See <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0163415#sec002" target="_blank">Materials and methods</a> for calculation of the percentage (vertical axis) of the ChIP data.</p
<p>(A) Pol II ChIP analysis of the <i>PMA1</i> gene in p53<sup>+</sup> and p53<sup>−</sup> cells. De...
<p>ChIP was carried out 3 and 6-treated cells and analyzed by quantitative (q)-PCRs to monitor Pol I...
(A) Schematic representation of the UGA4 locus, GATA sites (vertical segments above -sense GATA site...
<p>Top, diagram of the c-Fos genomic loci. Every PCR primers used for ChIP analyses in this study ar...
<p>(A, C, E, G) The locations of primers used in this assay are shown under the gene structures. (B,...
<p>(A) Average signals over 11,217 genes with nonoverlapping TSSs (see <a href="http://www.plosbiolo...
<p>Chip-seq data using an anti-Pol II antibody (N-20, our study) and Gro-seq <a href="http://www.plo...
<p>(A) Bar graph showing POLR2B (dark blue), GTF2B (light blue), POLR3D (red), and BRF2 (orange) ChI...
<p>Combined schematic (<b>A</b>) of long and short Nr4a3 isoforms showing locations of ChIP primers ...
<p>(A–C) ChIP analysis of the downstream region of the <i>GAPDH</i> gene (A), U2 and U4 snRNA genes ...
(a) Diagram depicting the plasmid vectors transfected into HEK293T cells containing pol II or pol II...
<p>(<b>A</b>) Schematic of Nr4a1 gene including upstream TSSs. Primer locations are indicated relati...
(a) Diagram depicting the plasmid vectors transfected into HEK293T cells to induce targeted DSBs usi...
<p>(A) Schematic representation of the HCMV genes and host GAPDH gene examined by chromatin immunopr...
<p>(A) Schematic representation of the <i>CXCL10</i> and <i>9</i> encompassing domain indicating the...
<p>(A) Pol II ChIP analysis of the <i>PMA1</i> gene in p53<sup>+</sup> and p53<sup>−</sup> cells. De...
<p>ChIP was carried out 3 and 6-treated cells and analyzed by quantitative (q)-PCRs to monitor Pol I...
(A) Schematic representation of the UGA4 locus, GATA sites (vertical segments above -sense GATA site...
<p>Top, diagram of the c-Fos genomic loci. Every PCR primers used for ChIP analyses in this study ar...
<p>(A, C, E, G) The locations of primers used in this assay are shown under the gene structures. (B,...
<p>(A) Average signals over 11,217 genes with nonoverlapping TSSs (see <a href="http://www.plosbiolo...
<p>Chip-seq data using an anti-Pol II antibody (N-20, our study) and Gro-seq <a href="http://www.plo...
<p>(A) Bar graph showing POLR2B (dark blue), GTF2B (light blue), POLR3D (red), and BRF2 (orange) ChI...
<p>Combined schematic (<b>A</b>) of long and short Nr4a3 isoforms showing locations of ChIP primers ...
<p>(A–C) ChIP analysis of the downstream region of the <i>GAPDH</i> gene (A), U2 and U4 snRNA genes ...
(a) Diagram depicting the plasmid vectors transfected into HEK293T cells containing pol II or pol II...
<p>(<b>A</b>) Schematic of Nr4a1 gene including upstream TSSs. Primer locations are indicated relati...
(a) Diagram depicting the plasmid vectors transfected into HEK293T cells to induce targeted DSBs usi...
<p>(A) Schematic representation of the HCMV genes and host GAPDH gene examined by chromatin immunopr...
<p>(A) Schematic representation of the <i>CXCL10</i> and <i>9</i> encompassing domain indicating the...
<p>(A) Pol II ChIP analysis of the <i>PMA1</i> gene in p53<sup>+</sup> and p53<sup>−</sup> cells. De...
<p>ChIP was carried out 3 and 6-treated cells and analyzed by quantitative (q)-PCRs to monitor Pol I...
(A) Schematic representation of the UGA4 locus, GATA sites (vertical segments above -sense GATA site...