<p>ChIP was carried out 3 and 6-treated cells and analyzed by quantitative (q)-PCRs to monitor Pol II (dark blue bars) (in A), TBP (green bars) (in B), p62 (light blue bars) (in C) occupancy on the promoters of genes selected from group A (<i>ubc, rplp1</i>), group B (<i>p21, wdr24</i>) and on a negative control (<i>intergenic</i>) region, as indicated. Control ChIP (NoAb, red bars) was carried out with Sepharose G beads only. The occupancy values at the promoters are represented in input %. Error bars represent +/− standard deviations.</p
cDNA from cells as in S2C was analysed by qPCR. Data is represented as gene expression relative to a...
<p>For the evaluation, we selected the most highly expressed genes involved in both DNA damage and p...
<p>Panel A presents results for total RNA integrity: Band 1 = Molecular weight marker, Band 2 = HeLa...
<p>ChIP-qPCR validation of Pol II occupancy following cordycepin treatment on poly(A)<sup>+</sup> ge...
<p>The correlation is tested by comparing three upregulated, four downregulated and two not regulate...
<p>(A) Kinetic ChIP experiments performed with RA-treated MCF7 and BT474 cells and determining the r...
<p>K-means clustering of Mock (blue) and Pol II (pink) reads on 100 highly expressed genes from MCF7...
<p>A) ChIP qPCR of Oct1 (Slc22a1), Oat1 (Slc22a6) and Oat3 (Slc22a8) promoters using an HNF4α antibo...
<p>Three ORFs showing high enrichment of RNAPII Ser5P and high expression levels by RNA-seq were sel...
(A) Schematic representation of the UGA4 locus, GATA sites (vertical segments above -sense GATA site...
<p>A total of 30 genes, including (A) 10 downregulated, (B) 10 upregulated, and (C) 10 unigenes with...
<p>ChIP-qPCR analysis was carried out as described in the <a href="http://www.plosone.org/article/in...
<p>(A, B, and C) Scheme of the genomic regions analyzed by ChIP-qPCR. (D, E, and F) Analysis of Nrd1...
<p>(A) Quantitative RT-PCR of a subset of markers with RNA isolated from ctrl and <i>Tfap2c<sup>−/−<...
<p>(A) Schematic representation of the <i>CXCL10</i> and <i>9</i> encompassing domain indicating the...
cDNA from cells as in S2C was analysed by qPCR. Data is represented as gene expression relative to a...
<p>For the evaluation, we selected the most highly expressed genes involved in both DNA damage and p...
<p>Panel A presents results for total RNA integrity: Band 1 = Molecular weight marker, Band 2 = HeLa...
<p>ChIP-qPCR validation of Pol II occupancy following cordycepin treatment on poly(A)<sup>+</sup> ge...
<p>The correlation is tested by comparing three upregulated, four downregulated and two not regulate...
<p>(A) Kinetic ChIP experiments performed with RA-treated MCF7 and BT474 cells and determining the r...
<p>K-means clustering of Mock (blue) and Pol II (pink) reads on 100 highly expressed genes from MCF7...
<p>A) ChIP qPCR of Oct1 (Slc22a1), Oat1 (Slc22a6) and Oat3 (Slc22a8) promoters using an HNF4α antibo...
<p>Three ORFs showing high enrichment of RNAPII Ser5P and high expression levels by RNA-seq were sel...
(A) Schematic representation of the UGA4 locus, GATA sites (vertical segments above -sense GATA site...
<p>A total of 30 genes, including (A) 10 downregulated, (B) 10 upregulated, and (C) 10 unigenes with...
<p>ChIP-qPCR analysis was carried out as described in the <a href="http://www.plosone.org/article/in...
<p>(A, B, and C) Scheme of the genomic regions analyzed by ChIP-qPCR. (D, E, and F) Analysis of Nrd1...
<p>(A) Quantitative RT-PCR of a subset of markers with RNA isolated from ctrl and <i>Tfap2c<sup>−/−<...
<p>(A) Schematic representation of the <i>CXCL10</i> and <i>9</i> encompassing domain indicating the...
cDNA from cells as in S2C was analysed by qPCR. Data is represented as gene expression relative to a...
<p>For the evaluation, we selected the most highly expressed genes involved in both DNA damage and p...
<p>Panel A presents results for total RNA integrity: Band 1 = Molecular weight marker, Band 2 = HeLa...