Additional file 2: of Plastome phylogeny and early diversification of Brassicaceae

Figure S1. Topologies of alternative tree hypothesis used in approximately unbiased test. Figure S2. Chronogram of Brassicaceae and 75 outgroup taxa inferred using MCMCTree. Figure S3. Alignment view of Brassicales rps16 genes in MEGA6. Figure S4. Alignment view of Brassicales ycf15 genes in MEGA6. Figure S5. A phylogeny from ML analyses of 77 PCGs using 1st an 2nd codon. Figure S6. A phylogeny from ML analyses of 77 PCGs using genes from the IR region. Figure S7. A phylogeny from ML analyses of 77 PCGs using 3rd codon. Figure S8. A phylogeny from ML analyses of 77 PCGs using all three codons. (PDF 625Â kb