Additional file 3: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Data from: Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Zou, Jun
Hu, Dandan
Liu, Peifa
Raman, Harsh
Liu, Zhongsong
Liu, Xianjun
Parkin, Isobel
Chalhoub, Boulos
Meng, Jinling

January 2016

Background: There are three basic Brassica genomes (A, B, and C) and three parallel sets of subgenom...

Additional file 7: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S4. Box-plots of gene retention ratio. Statistics by genomes (A) and by gene names (B) are sh...

Additional file 4: Table S2. of Evolutionary history and functional divergence of the cytochrome P450 gene superfamily between Arabidopsis thaliana and Brassica species uncover effects of whole genome and tandem duplications

Jingyin Yu (176516)
Sadia Tehrim (4444294)
Linhai Wang (2548483)
Komivi Dossa (3524930)
Xiurong Zhang (2548480)
Tao Ke (691886)
Boshou Liao (118400)

September 2017

Orthologous genes pairs from different whole genome duplication events in A. thaliana compared with ...

Additional file 2: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Jun Zou (683)
Dandan Hu (2823056)
Peifa Liu (3294570)
Harsh Raman (132066)
Zhongsong Liu (447400)
Xianjun Liu (433040)
Isobel Parkin (171781)
Boulos Chalhoub (3294573)
Jinling Meng (118331)

January 2016

Information of the linkage map of the B. juncea constructed with SY-PM population. (XLSX 1052Â kb

Additional file 6: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Jun Zou (683)
Dandan Hu (2823056)
Peifa Liu (3294570)
Harsh Raman (132066)
Zhongsong Liu (447400)
Xianjun Liu (433040)
Isobel Parkin (171781)
Boulos Chalhoub (3294573)
Jinling Meng (118331)

January 2016

Calculation on the population genetic distance among the three species carrying A genome by resampli...

Additional file 1: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Jun Zou (683)
Dandan Hu (2823056)
Peifa Liu (3294570)
Harsh Raman (132066)
Zhongsong Liu (447400)
Xianjun Liu (433040)
Isobel Parkin (171781)
Boulos Chalhoub (3294573)
Jinling Meng (118331)

January 2016

Information of DArT-seq markers and genotypes of the SY-PM genetic mapping population of B. juncea. ...

Additional file 5: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Jun Zou (683)
Dandan Hu (2823056)
Peifa Liu (3294570)
Harsh Raman (132066)
Zhongsong Liu (447400)
Xianjun Liu (433040)
Isobel Parkin (171781)
Boulos Chalhoub (3294573)
Jinling Meng (118331)

January 2016

Phylogenetic tree of the three A genome-contained species evaluated with different sets of markers. ...

Additional file 7: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Jun Zou (683)
Dandan Hu (2823056)
Peifa Liu (3294570)
Harsh Raman (132066)
Zhongsong Liu (447400)
Xianjun Liu (433040)
Isobel Parkin (171781)
Boulos Chalhoub (3294573)
Jinling Meng (118331)

January 2016

The ∆K value of the population genetic structure of the 26 Brassica accessions generated using the S...

Additional file 2: of Plastome phylogeny and early diversification of Brassicaceae

Xinyi Guo (3755509)
Jianquan Liu (200999)
Guoqian Hao (3755506)
Lei Zhang (38117)
Kangshan Mao (447330)
Xiaojuan Wang (105141)
Dan Zhang (51283)
Tao Ma (88669)
Quanjun Hu (3322290)
Ihsan Al-Shehbaz (3260520)
Marcus Koch (364485)

February 2017

Figure S1. Topologies of alternative tree hypothesis used in approximately unbiased test. Figure S2....

Additional file 5: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Table S3. List of origin genes in B. rapa, B. nigra and amphidiploid genes in B. napus, B. juncea. H...

Additional file 6: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S3. Chromosomal mapping of CRFs in B. nigra and B. juncea. The CRFs in B. nigra (A) and B. ju...

Additional file 8: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S5. Gene retention ratios of CRFs in the three sub-genomes of B. rapa, B. oleracea, and B. na...

Additional file 4: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S2. Synteny analysis of CRFs among Brassica species. (A) Alignment between genes in diploid a...

Additional file 3: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S1. Conserve motif alignment of three types CRFs. The figure was obtained by ClustalX and Wed...

Data from: Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Zou, Jun
Hu, Dandan
Liu, Peifa
Raman, Harsh
Liu, Zhongsong
Liu, Xianjun
Parkin, Isobel
Chalhoub, Boulos
Meng, Jinling

January 2016

Background: There are three basic Brassica genomes (A, B, and C) and three parallel sets of subgenom...

Data from: Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Zou, Jun
Hu, Dandan
Liu, Peifa
Raman, Harsh
Liu, Zhongsong
Liu, Xianjun
Parkin, Isobel
Chalhoub, Boulos
Meng, Jinling

January 2016

Background: There are three basic Brassica genomes (A, B, and C) and three parallel sets of subgenom...

Additional file 7: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S4. Box-plots of gene retention ratio. Statistics by genomes (A) and by gene names (B) are sh...

Additional file 4: Table S2. of Evolutionary history and functional divergence of the cytochrome P450 gene superfamily between Arabidopsis thaliana and Brassica species uncover effects of whole genome and tandem duplications

Jingyin Yu (176516)
Sadia Tehrim (4444294)
Linhai Wang (2548483)
Komivi Dossa (3524930)
Xiurong Zhang (2548480)
Tao Ke (691886)
Boshou Liao (118400)

September 2017

Orthologous genes pairs from different whole genome duplication events in A. thaliana compared with ...

Additional file 2: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Jun Zou (683)
Dandan Hu (2823056)
Peifa Liu (3294570)
Harsh Raman (132066)
Zhongsong Liu (447400)
Xianjun Liu (433040)
Isobel Parkin (171781)
Boulos Chalhoub (3294573)
Jinling Meng (118331)

January 2016

Information of the linkage map of the B. juncea constructed with SY-PM population. (XLSX 1052Â kb

Additional file 6: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Jun Zou (683)
Dandan Hu (2823056)
Peifa Liu (3294570)
Harsh Raman (132066)
Zhongsong Liu (447400)
Xianjun Liu (433040)
Isobel Parkin (171781)
Boulos Chalhoub (3294573)
Jinling Meng (118331)

January 2016

Calculation on the population genetic distance among the three species carrying A genome by resampli...

Additional file 1: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Jun Zou (683)
Dandan Hu (2823056)
Peifa Liu (3294570)
Harsh Raman (132066)
Zhongsong Liu (447400)
Xianjun Liu (433040)
Isobel Parkin (171781)
Boulos Chalhoub (3294573)
Jinling Meng (118331)

January 2016

Information of DArT-seq markers and genotypes of the SY-PM genetic mapping population of B. juncea. ...

Additional file 5: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Jun Zou (683)
Dandan Hu (2823056)
Peifa Liu (3294570)
Harsh Raman (132066)
Zhongsong Liu (447400)
Xianjun Liu (433040)
Isobel Parkin (171781)
Boulos Chalhoub (3294573)
Jinling Meng (118331)

January 2016

Phylogenetic tree of the three A genome-contained species evaluated with different sets of markers. ...

Additional file 7: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Jun Zou (683)
Dandan Hu (2823056)
Peifa Liu (3294570)
Harsh Raman (132066)
Zhongsong Liu (447400)
Xianjun Liu (433040)
Isobel Parkin (171781)
Boulos Chalhoub (3294573)
Jinling Meng (118331)

January 2016

The ∆K value of the population genetic structure of the 26 Brassica accessions generated using the S...

Additional file 2: of Plastome phylogeny and early diversification of Brassicaceae

Xinyi Guo (3755509)
Jianquan Liu (200999)
Guoqian Hao (3755506)
Lei Zhang (38117)
Kangshan Mao (447330)
Xiaojuan Wang (105141)
Dan Zhang (51283)
Tao Ma (88669)
Quanjun Hu (3322290)
Ihsan Al-Shehbaz (3260520)
Marcus Koch (364485)

February 2017

Figure S1. Topologies of alternative tree hypothesis used in approximately unbiased test. Figure S2....

Additional file 5: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Table S3. List of origin genes in B. rapa, B. nigra and amphidiploid genes in B. napus, B. juncea. H...

Additional file 6: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S3. Chromosomal mapping of CRFs in B. nigra and B. juncea. The CRFs in B. nigra (A) and B. ju...

Additional file 8: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S5. Gene retention ratios of CRFs in the three sub-genomes of B. rapa, B. oleracea, and B. na...

Additional file 4: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S2. Synteny analysis of CRFs among Brassica species. (A) Alignment between genes in diploid a...

Additional file 3: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S1. Conserve motif alignment of three types CRFs. The figure was obtained by ClustalX and Wed...

Data from: Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Zou, Jun
Hu, Dandan
Liu, Peifa
Raman, Harsh
Liu, Zhongsong
Liu, Xianjun
Parkin, Isobel
Chalhoub, Boulos
Meng, Jinling

January 2016

Background: There are three basic Brassica genomes (A, B, and C) and three parallel sets of subgenom...

Data from: Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Zou, Jun
Hu, Dandan
Liu, Peifa
Raman, Harsh
Liu, Zhongsong
Liu, Xianjun
Parkin, Isobel
Chalhoub, Boulos
Meng, Jinling

January 2016

Background: There are three basic Brassica genomes (A, B, and C) and three parallel sets of subgenom...

Additional file 7: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S4. Box-plots of gene retention ratio. Statistics by genomes (A) and by gene names (B) are sh...

Additional file 4: Table S2. of Evolutionary history and functional divergence of the cytochrome P450 gene superfamily between Arabidopsis thaliana and Brassica species uncover effects of whole genome and tandem duplications

Jingyin Yu (176516)
Sadia Tehrim (4444294)
Linhai Wang (2548483)
Komivi Dossa (3524930)
Xiurong Zhang (2548480)
Tao Ke (691886)
Boshou Liao (118400)

September 2017

Orthologous genes pairs from different whole genome duplication events in A. thaliana compared with ...

Additional file 3: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Abstract

Extracted data

Additional file 3: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Abstract

Extracted data

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