Additional file 5: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Additional file 5: of Genome-wide identification, phylogeny, evolution, and expression patterns of MtN3/saliva/SWEET genes and functional analysis of BcNS in Brassica rapa

Liming Miao (4908292)
Yanxia Lv (503393)
Lijun Kong (503392)
Qizhen Chen (4089988)
Chaoquan Chen (4908295)
Jia Li (160557)
Fanhuan Zeng (4908301)
Shenyun Wang (4908298)
Jianbin Li (312148)
Li Huang (107408)
Jiashu Cao (503396)
Xiaolin Yu (192623)

March 2018

Table S3. Putative cis-elements in promoter region of the 34 MtN3/saliva/SWEETs genes in B. rapa. (X...

Additional file 1: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Jun Zou (683)
Dandan Hu (2823056)
Peifa Liu (3294570)
Harsh Raman (132066)
Zhongsong Liu (447400)
Xianjun Liu (433040)
Isobel Parkin (171781)
Boulos Chalhoub (3294573)
Jinling Meng (118331)

January 2016

Information of DArT-seq markers and genotypes of the SY-PM genetic mapping population of B. juncea. ...

Additional file 3: of Genome-wide characterization and expression profiling of SWEET genes in cabbage (Brassica oleracea var. capitata L.) reveal their roles in chilling and clubroot disease responses

Wei Zhang (405)
Shenyun Wang (4908298)
Fangwei Yu (401152)
Jun Tang (32983)
Xi Shan (6275843)
Kan Bao (5926043)
Li Yu (81651)
Hong Wang (13528)
Zhangjun Fei (14143)
Jianbin Li (312148)

January 2019

Figure S1. Phylogenetic tree of B. oleracea, B. rapa and A. thaliana SWEET proteins. Phylogenetic an...

Additional file 8: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S5. Gene retention ratios of CRFs in the three sub-genomes of B. rapa, B. oleracea, and B. na...

Additional file 4: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S2. Synteny analysis of CRFs among Brassica species. (A) Alignment between genes in diploid a...

Additional file 6: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S3. Chromosomal mapping of CRFs in B. nigra and B. juncea. The CRFs in B. nigra (A) and B. ju...

Additional file 9: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S6. Ka/Ks values of CRF orthologous gene pairs of Br-At, Bol-At and Bna-At over a sliding win...

Additional file 3: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S1. Conserve motif alignment of three types CRFs. The figure was obtained by ClustalX and Wed...

Additional file 7: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S4. Box-plots of gene retention ratio. Statistics by genomes (A) and by gene names (B) are sh...

Additional file 11: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Table S5. Elements relate to hormone and stress in the promotor of CRFs predicted by PlantCARE. (XLS...

Additional file 10: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Table S4. Elements relate to hormone and stress in the promotor of CRFs predicted by PLACE.Table S5....

Additional file 5: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Jun Zou (683)
Dandan Hu (2823056)
Peifa Liu (3294570)
Harsh Raman (132066)
Zhongsong Liu (447400)
Xianjun Liu (433040)
Isobel Parkin (171781)
Boulos Chalhoub (3294573)
Jinling Meng (118331)

January 2016

Phylogenetic tree of the three A genome-contained species evaluated with different sets of markers. ...

Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong
Kun Zhao
Yingying Gao
Liming Miao
Chaoquan Chen
Hang Deng
Zhenning Liu
Xiaolin Yu

October 2018

Abstract Background Cytokinin is a classical phytohormone that plays important roles in numerous pla...

Additional file 7: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Jun Zou (683)
Dandan Hu (2823056)
Peifa Liu (3294570)
Harsh Raman (132066)
Zhongsong Liu (447400)
Xianjun Liu (433040)
Isobel Parkin (171781)
Boulos Chalhoub (3294573)
Jinling Meng (118331)

January 2016

The ∆K value of the population genetic structure of the 26 Brassica accessions generated using the S...

Additional file 3: of Genome-wide identification, phylogeny, evolution, and expression patterns of MtN3/saliva/SWEET genes and functional analysis of BcNS in Brassica rapa

Liming Miao (4908292)
Yanxia Lv (503393)
Lijun Kong (503392)
Qizhen Chen (4089988)
Chaoquan Chen (4908295)
Jia Li (160557)
Fanhuan Zeng (4908301)
Shenyun Wang (4908298)
Jianbin Li (312148)
Li Huang (107408)
Jiashu Cao (503396)
Xiaolin Yu (192623)

March 2018

Figure S1. Copy number changes in the B. rapa and Arabidopsis MtN3/saliva/SWEET genes in Clades Aâ...

Additional file 5: of Genome-wide identification, phylogeny, evolution, and expression patterns of MtN3/saliva/SWEET genes and functional analysis of BcNS in Brassica rapa

Liming Miao (4908292)
Yanxia Lv (503393)
Lijun Kong (503392)
Qizhen Chen (4089988)
Chaoquan Chen (4908295)
Jia Li (160557)
Fanhuan Zeng (4908301)
Shenyun Wang (4908298)
Jianbin Li (312148)
Li Huang (107408)
Jiashu Cao (503396)
Xiaolin Yu (192623)

March 2018

Table S3. Putative cis-elements in promoter region of the 34 MtN3/saliva/SWEETs genes in B. rapa. (X...

Additional file 1: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Jun Zou (683)
Dandan Hu (2823056)
Peifa Liu (3294570)
Harsh Raman (132066)
Zhongsong Liu (447400)
Xianjun Liu (433040)
Isobel Parkin (171781)
Boulos Chalhoub (3294573)
Jinling Meng (118331)

January 2016

Information of DArT-seq markers and genotypes of the SY-PM genetic mapping population of B. juncea. ...

Additional file 3: of Genome-wide characterization and expression profiling of SWEET genes in cabbage (Brassica oleracea var. capitata L.) reveal their roles in chilling and clubroot disease responses

Wei Zhang (405)
Shenyun Wang (4908298)
Fangwei Yu (401152)
Jun Tang (32983)
Xi Shan (6275843)
Kan Bao (5926043)
Li Yu (81651)
Hong Wang (13528)
Zhangjun Fei (14143)
Jianbin Li (312148)

January 2019

Figure S1. Phylogenetic tree of B. oleracea, B. rapa and A. thaliana SWEET proteins. Phylogenetic an...

Additional file 8: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S5. Gene retention ratios of CRFs in the three sub-genomes of B. rapa, B. oleracea, and B. na...

Additional file 4: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S2. Synteny analysis of CRFs among Brassica species. (A) Alignment between genes in diploid a...

Additional file 6: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S3. Chromosomal mapping of CRFs in B. nigra and B. juncea. The CRFs in B. nigra (A) and B. ju...

Additional file 9: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S6. Ka/Ks values of CRF orthologous gene pairs of Br-At, Bol-At and Bna-At over a sliding win...

Additional file 3: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S1. Conserve motif alignment of three types CRFs. The figure was obtained by ClustalX and Wed...

Additional file 7: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Figure S4. Box-plots of gene retention ratio. Statistics by genomes (A) and by gene names (B) are sh...

Additional file 11: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Table S5. Elements relate to hormone and stress in the promotor of CRFs predicted by PlantCARE. (XLS...

Additional file 10: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong (503392)
Kun Zhao (279513)
Yingying Gao (109828)
Liming Miao (4908292)
Chaoquan Chen (4908295)
Hang Deng (1664668)
Zhenning Liu (503391)
Xiaolin Yu (192623)

October 2018

Table S4. Elements relate to hormone and stress in the promotor of CRFs predicted by PLACE.Table S5....

Additional file 5: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Jun Zou (683)
Dandan Hu (2823056)
Peifa Liu (3294570)
Harsh Raman (132066)
Zhongsong Liu (447400)
Xianjun Liu (433040)
Isobel Parkin (171781)
Boulos Chalhoub (3294573)
Jinling Meng (118331)

January 2016

Phylogenetic tree of the three A genome-contained species evaluated with different sets of markers. ...

Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Lijun Kong
Kun Zhao
Yingying Gao
Liming Miao
Chaoquan Chen
Hang Deng
Zhenning Liu
Xiaolin Yu

October 2018

Abstract Background Cytokinin is a classical phytohormone that plays important roles in numerous pla...

Additional file 7: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Jun Zou (683)
Dandan Hu (2823056)
Peifa Liu (3294570)
Harsh Raman (132066)
Zhongsong Liu (447400)
Xianjun Liu (433040)
Isobel Parkin (171781)
Boulos Chalhoub (3294573)
Jinling Meng (118331)

January 2016

The ∆K value of the population genetic structure of the 26 Brassica accessions generated using the S...

Additional file 3: of Genome-wide identification, phylogeny, evolution, and expression patterns of MtN3/saliva/SWEET genes and functional analysis of BcNS in Brassica rapa

Liming Miao (4908292)
Yanxia Lv (503393)
Lijun Kong (503392)
Qizhen Chen (4089988)
Chaoquan Chen (4908295)
Jia Li (160557)
Fanhuan Zeng (4908301)
Shenyun Wang (4908298)
Jianbin Li (312148)
Li Huang (107408)
Jiashu Cao (503396)
Xiaolin Yu (192623)

March 2018

Figure S1. Copy number changes in the B. rapa and Arabidopsis MtN3/saliva/SWEET genes in Clades Aâ...

Additional file 5: of Genome-wide identification, phylogeny, evolution, and expression patterns of MtN3/saliva/SWEET genes and functional analysis of BcNS in Brassica rapa

Liming Miao (4908292)
Yanxia Lv (503393)
Lijun Kong (503392)
Qizhen Chen (4089988)
Chaoquan Chen (4908295)
Jia Li (160557)
Fanhuan Zeng (4908301)
Shenyun Wang (4908298)
Jianbin Li (312148)
Li Huang (107408)
Jiashu Cao (503396)
Xiaolin Yu (192623)

March 2018

Table S3. Putative cis-elements in promoter region of the 34 MtN3/saliva/SWEETs genes in B. rapa. (X...

Additional file 1: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

Jun Zou (683)
Dandan Hu (2823056)
Peifa Liu (3294570)
Harsh Raman (132066)
Zhongsong Liu (447400)
Xianjun Liu (433040)
Isobel Parkin (171781)
Boulos Chalhoub (3294573)
Jinling Meng (118331)

January 2016

Information of DArT-seq markers and genotypes of the SY-PM genetic mapping population of B. juncea. ...

Additional file 3: of Genome-wide characterization and expression profiling of SWEET genes in cabbage (Brassica oleracea var. capitata L.) reveal their roles in chilling and clubroot disease responses

Wei Zhang (405)
Shenyun Wang (4908298)
Fangwei Yu (401152)
Jun Tang (32983)
Xi Shan (6275843)
Kan Bao (5926043)
Li Yu (81651)
Hong Wang (13528)
Zhangjun Fei (14143)
Jianbin Li (312148)

January 2019

Figure S1. Phylogenetic tree of B. oleracea, B. rapa and A. thaliana SWEET proteins. Phylogenetic an...

Additional file 5: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Abstract

Extracted data

Additional file 5: of Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species

Abstract

Extracted data

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