Table S1. Summary of Brassica rapa assembled transcriptome. Table S2. Statistics of annotation results for Brassica rapa Unigenes. Table S3. The expression of DEGs in floral buds of the fertile and sterile lines (RPKM value). Table S4. The significantly enriched Gene Ontology (GO) terms by DEGs at each stage. Table S5. The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway by DEGs at each stage. Table S6. Expressional changes of putative transcription factors. Table S7. GO analysis of DEGs enriched for H3K4me3 or H3K27me3. Table S8. Primers used in this article. (XLSX 971 kb
Figure S4. Box-plots of gene retention ratio. Statistics by genomes (A) and by gene names (B) are sh...
The top 20 most represented GO terms of DEG in the biological process category at the 5â7 DAF (S1-...
Table S3. List of origin genes in B. rapa, B. nigra and amphidiploid genes in B. napus, B. juncea. H...
Figure S1. The length distribution of assembled Brassica rapa contigs. (TIF 1833 kb
Figure S2. The length distribution of assembled Brassica rapa Unigenes. (TIF 2354 kb
Figure S7. Significantly enriched Molecular Functions GO terms in the group of down-regulated genes ...
Figure S6. Significantly enriched Biological Processes GO terms in the group of down-regulated genes...
Table S1. Summary of read mapping in RNA-Seq analysis of yellow and black rapeseeds. B3, B4, B5, B6 ...
Figure S1. Topologies of alternative tree hypothesis used in approximately unbiased test. Figure S2....
Pie-chart shows the E-value, similarity and species distribution of Brassica napus L. to other plant...
Additional file 2: Table S1. Genome-wide eQTLs identified at 20 DAF. Table S2. Genome-wide eQTLs ide...
Data set 1. DEGs detected by pairwise comparison in NKR-06 and two parents. Data set 2. DEGs detecte...
Table S1. 27,236 OGs of all the protein-coding genes in Arabidopsis thaliana, Glycine max, Brassica ...
Table S1. Gene-specific Primers used for qRT-PCR assays in this study. Table S2. Overview of the hig...
CCCH duplicated genes of B. rapa. Syntenic analysis between Arabidopsis and B. rapa was detected at ...
Figure S4. Box-plots of gene retention ratio. Statistics by genomes (A) and by gene names (B) are sh...
The top 20 most represented GO terms of DEG in the biological process category at the 5â7 DAF (S1-...
Table S3. List of origin genes in B. rapa, B. nigra and amphidiploid genes in B. napus, B. juncea. H...
Figure S1. The length distribution of assembled Brassica rapa contigs. (TIF 1833 kb
Figure S2. The length distribution of assembled Brassica rapa Unigenes. (TIF 2354 kb
Figure S7. Significantly enriched Molecular Functions GO terms in the group of down-regulated genes ...
Figure S6. Significantly enriched Biological Processes GO terms in the group of down-regulated genes...
Table S1. Summary of read mapping in RNA-Seq analysis of yellow and black rapeseeds. B3, B4, B5, B6 ...
Figure S1. Topologies of alternative tree hypothesis used in approximately unbiased test. Figure S2....
Pie-chart shows the E-value, similarity and species distribution of Brassica napus L. to other plant...
Additional file 2: Table S1. Genome-wide eQTLs identified at 20 DAF. Table S2. Genome-wide eQTLs ide...
Data set 1. DEGs detected by pairwise comparison in NKR-06 and two parents. Data set 2. DEGs detecte...
Table S1. 27,236 OGs of all the protein-coding genes in Arabidopsis thaliana, Glycine max, Brassica ...
Table S1. Gene-specific Primers used for qRT-PCR assays in this study. Table S2. Overview of the hig...
CCCH duplicated genes of B. rapa. Syntenic analysis between Arabidopsis and B. rapa was detected at ...
Figure S4. Box-plots of gene retention ratio. Statistics by genomes (A) and by gene names (B) are sh...
The top 20 most represented GO terms of DEG in the biological process category at the 5â7 DAF (S1-...
Table S3. List of origin genes in B. rapa, B. nigra and amphidiploid genes in B. napus, B. juncea. H...