(A) A genome track plot of the LNC3385 locus displaying the ATAC-seq signals. ATAC-seq peaks are indicated with corresponding color-coded bars below the tracks. A genome scale bar with the RERE and LNC3385 loci is shown below. (B) A pie chart illustrating the proportion of all long non-coding RNAs that overlap with chromatin accessible regions (ACRs). (TIF)</p
<p>Regions are genome, intergenic regions and exons. In the case of protein coding genes, exons incl...
<p>A total of 472 ncRNAs were had homology with filtered gene set genes that covered less than 50% o...
<p>The log<sub>2</sub>(fold change) of each lncRNA (left) or its neighboring protein-coding gene (ri...
(A) Volcano plot of differentially accessible chromatin regions (Cut-off: |Log2FC| ≥ 0.5, adjusted P...
(A) Distribution of ATAC-seq fragment size in each sample. (B) A heatmap detailing chromatin accessi...
The location of ATAC-seq peaks (left) and differentially-accessible regions (DARs, right) relative t...
<p>We analyzed ChIP-seq data of five representative chromatin marks for putative embryonic brain lnc...
Assay for transposase-accessible chromatin using sequencing data (ATAC-seq) is an efficient and prec...
<p>(<b>A</b>) Overview of genomic and chromatin composition (%GC) of functional LTR neighborhood. Fo...
The Assay for Transposase-Accessible Chromatin using sequencing (ATAC-seq) is a fundamental epigenom...
Eukaryotic genomes are hierarchically packaged into chromatin, with open chromatin and nucleosome oc...
<p>Diagram on the top is a visual illustration of each class of lncRNAs relative to nearest protein-...
R environments to reproduce the LCM-ATAC-seq analysis in Carraro et al., Cell Reports Methods, 2023....
The outer ring represents the chicken genome labeled with chromosome number and position. The green ...
<p>The tracks are from top to bottom in each panel: Horizontal red bars represent lncRNA transcript ...
<p>Regions are genome, intergenic regions and exons. In the case of protein coding genes, exons incl...
<p>A total of 472 ncRNAs were had homology with filtered gene set genes that covered less than 50% o...
<p>The log<sub>2</sub>(fold change) of each lncRNA (left) or its neighboring protein-coding gene (ri...
(A) Volcano plot of differentially accessible chromatin regions (Cut-off: |Log2FC| ≥ 0.5, adjusted P...
(A) Distribution of ATAC-seq fragment size in each sample. (B) A heatmap detailing chromatin accessi...
The location of ATAC-seq peaks (left) and differentially-accessible regions (DARs, right) relative t...
<p>We analyzed ChIP-seq data of five representative chromatin marks for putative embryonic brain lnc...
Assay for transposase-accessible chromatin using sequencing data (ATAC-seq) is an efficient and prec...
<p>(<b>A</b>) Overview of genomic and chromatin composition (%GC) of functional LTR neighborhood. Fo...
The Assay for Transposase-Accessible Chromatin using sequencing (ATAC-seq) is a fundamental epigenom...
Eukaryotic genomes are hierarchically packaged into chromatin, with open chromatin and nucleosome oc...
<p>Diagram on the top is a visual illustration of each class of lncRNAs relative to nearest protein-...
R environments to reproduce the LCM-ATAC-seq analysis in Carraro et al., Cell Reports Methods, 2023....
The outer ring represents the chicken genome labeled with chromosome number and position. The green ...
<p>The tracks are from top to bottom in each panel: Horizontal red bars represent lncRNA transcript ...
<p>Regions are genome, intergenic regions and exons. In the case of protein coding genes, exons incl...
<p>A total of 472 ncRNAs were had homology with filtered gene set genes that covered less than 50% o...
<p>The log<sub>2</sub>(fold change) of each lncRNA (left) or its neighboring protein-coding gene (ri...