The location of ATAC-seq peaks (left) and differentially-accessible regions (DARs, right) relative to annotated transcription start sites (TSS) in the human genome. Whereas ATAC-seq peaks are strongly enriched at TSS, only 51 (9.6%) of DARs are located within 5 kb of annotated transcription start sites (yellow shading). (TIF)</p
The assay for transposase-accessible chromatin followed by sequencing (ATAC-seq) is an inexpensive p...
Overview ATAC-STARR-seq is a massively parallel reporter assay (MPRA) that quantifies regulatory ac...
To support transcriptional regulation studies, we have constructed DBTSS (DataBase of Transcriptiona...
<p>Although deep sequencing reads were mapped throughout the genome, there was enrichment around tha...
<p>(A) Genome distribution of So-enriched regions (peaks) with respect to annotated transcription st...
a<p>: Annotation according to <a href="http://www.pseudomonas.com" target="_blank">www.pseudomonas.c...
Although transcription in mammalian genomes can initiate from various genomic positions (e.g., 3′UTR...
The Assay for Transposase-Accessible Chromatin using sequencing (ATAC-seq) is a fundamental epigenom...
(A) A genome track plot of the LNC3385 locus displaying the ATAC-seq signals. ATAC-seq peaks are ind...
The chromatin accessibility pattern at all of the ATAC-seq peaks in the T. gondii genome at the tach...
Assay of Transposase Accessible Chromatin sequencing (ATAC-seq) is widely used in studying chromatin...
<p>(A) Heatmap of ATAC-seq Tn5 transposase cut site occurrence in 500bp around 805 CTCF ChIP peaks c...
Abstract Transposase-Accessible Chromatin followed by sequencing (ATAC-seq) is a simple protocol for...
Footprinting analysis allows genome-wide investigation of transcription factor (TF) binding on chrom...
<p>Distribution of top-scoring TFs across (A) DNase-seq and (B) ATAC-seq peaks. TFs identified by Se...
The assay for transposase-accessible chromatin followed by sequencing (ATAC-seq) is an inexpensive p...
Overview ATAC-STARR-seq is a massively parallel reporter assay (MPRA) that quantifies regulatory ac...
To support transcriptional regulation studies, we have constructed DBTSS (DataBase of Transcriptiona...
<p>Although deep sequencing reads were mapped throughout the genome, there was enrichment around tha...
<p>(A) Genome distribution of So-enriched regions (peaks) with respect to annotated transcription st...
a<p>: Annotation according to <a href="http://www.pseudomonas.com" target="_blank">www.pseudomonas.c...
Although transcription in mammalian genomes can initiate from various genomic positions (e.g., 3′UTR...
The Assay for Transposase-Accessible Chromatin using sequencing (ATAC-seq) is a fundamental epigenom...
(A) A genome track plot of the LNC3385 locus displaying the ATAC-seq signals. ATAC-seq peaks are ind...
The chromatin accessibility pattern at all of the ATAC-seq peaks in the T. gondii genome at the tach...
Assay of Transposase Accessible Chromatin sequencing (ATAC-seq) is widely used in studying chromatin...
<p>(A) Heatmap of ATAC-seq Tn5 transposase cut site occurrence in 500bp around 805 CTCF ChIP peaks c...
Abstract Transposase-Accessible Chromatin followed by sequencing (ATAC-seq) is a simple protocol for...
Footprinting analysis allows genome-wide investigation of transcription factor (TF) binding on chrom...
<p>Distribution of top-scoring TFs across (A) DNase-seq and (B) ATAC-seq peaks. TFs identified by Se...
The assay for transposase-accessible chromatin followed by sequencing (ATAC-seq) is an inexpensive p...
Overview ATAC-STARR-seq is a massively parallel reporter assay (MPRA) that quantifies regulatory ac...
To support transcriptional regulation studies, we have constructed DBTSS (DataBase of Transcriptiona...