S6 Table - | ORKG Ask

The actual composition and cross-broad layout of each peptide pools derived from the N protein (upper panel).

Taisheng Li (269024)
Jing Xie (180526)
Yuxian He (277042)
Hongwei Fan (379379)
Laurence Baril (186664)
Zhifeng Qiu (269028)
Yang Han (269027)
Wenbing Xu (297922)
Weihong Zhang (188305)
Hui You (379380)
Yanling Zuo (379381)
Qing Fang (254280)
Jian Yu (141239)
Zhiwei Chen (254191)
Linqi Zhang (350238)

February 2013

<div>The 57 peptides (one is not listed) were pooled into 15 groups, 7 of which (NX1-7) are liste...

Peptide data from observed proteomic differences between E. histolytica and E. dispar.

Paul H. Davis (373403)
Minghe Chen (373404)
Xiaochun Zhang (51139)
C. Graham Clark (60047)
R. Reid Townsend (233235)
Samuel L. Stanley Jr. (373405)

February 2013

Peptide data from observed proteomic differences between E. histolytica and E. dispar</...

Proteomic results and Gene Ontology analysis for five wild-type femurs.

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

Proteins identified in wild-type mouse femurs were analyzed using ConsensusPathDB-mouse (Release MM1...

S2 Table -

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

A) Protein report for MS analysis of 5 Wild-type femur lysates showing 2108 protein identifications ...

S1 Table -

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

A) Protein report for MS analysis of technical injections of femur lysate showing 712 protein identi...

S9 Table -

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

A) Spectral Library created for hydroxyproline analysis from DDA acquisitions of 5 WT mouse femurs c...

S4 Table -

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

A) All 1633 identified proteins from the Female vs Male comparison of mouse femurs with ≥2 unique pe...

Sequences of the 17 Peptides used for the first model in the discovery set.

Mirelle E. E. Bröker (446915)
Zarina S. Lalmahomed (446916)
Henk P. Roest (446917)
Nick A. van Huizen (346685)
Lennard J. M. Dekker (246338)
Wim Calame (446918)
Cornelis Verhoef (446919)
Jan N. M. IJzermans (283157)
Theo M. Luider (242944)

August 2013

The amino acids which are underscored are hydroxylated. The two peptides which are written in bol...

Proteotyping results of the twelve representative strains included in the study (averages of triplicate analyses).

Roger Karlsson (366815)
Lucia Gonzales-Siles (5990771)
Margarita Gomila (644851)
Antonio Busquets (669903)
Francisco Salvà-Serra (4683589)
Daniel Jaén-Luchoro (4683583)
Hedvig E. Jakobsson (251280)
Anders Karlsson (217161)
Fredrik Boulund (4411366)
Erik Kristiansson (75825)
Edward R. B. Moore (426748)

December 2018

The number of species-unique peptide matches and accuracies (%), using the two databases are shown i...

Peptide detection significance levels using experimental spectra of the 103 peptides with and without any post-translational modifications (PTMs) against a standard target database across database search programs (OMSSA, X! Tandem, and Crux).

Malik N. Akhtar (646360)
Bruce R. Southey (19329)
Per E. Andrén (39579)
Jonathan V. Sweedler (19333)
Sandra L. Rodriguez-Zas (19332)

October 2014

aSignificance threshold (t) for matched to be considered significant at an E-value or p...

Fig. 2 in Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry

John M. Asara
Mary H. Schweitzer
Lisa M. Freimark
Matthew Phillips
Lewis C. Cantley

April 2007

Fig. 2. Collagen peptide sequences unique to extinct mastodon identified by LC/MS/MS. (A) The four c...

Additional file 1: of A survey of proteomic biomarkers for heterotopic ossification in blood serum

Laura Edsberg (4004981)
Erin Crowgey (4004984)
Patrick Osborn (4004978)
Jennifer Wyffels (4004975)

May 2017

Selection reaction monitoring (SRM) peptide transition parameters for protein candidates. Transition...

Supplemental Data Set 2. The complete unfiltered set of 60366 p-peptides with matched protein id, their metadata, p-15-mers, annotation from PPDB, SUBA3 consensus prediction and assignment to one of seven locations.

Klaas J. van Wijk (90285)
Giulia Friso (90282)
Dirk Walther (32589)
Waltraud X. Schulze (1555645)

November 2016

Supplemental Data Set 2. The complete unfiltered set of 60366 p-peptides with matched protein id, th...

Peptides identified by the MS/MS tandem analysis.

Paola Cecchini (344060)
Regina Tavano (344061)
Patrizia Polverino de Laureto (110842)
Susanna Franzoso (344062)
Cristina Mazzon (344063)
Paolo Montanari (344064)
Emanuele Papini (344065)

February 2013

Peptides identified by the MS/MS analysis and recognized by Mascot. In the columns are indicated,...

Summary of peptide reactivities.

Santiago J. Carmona (110864)
Paula A. Sartor (110865)
María S. Leguizamón (110866)
Oscar E. Campetella (110867)
Fernán Agüero (14139)

December 2012

The table summarizes the results from the screening of pools of positive (Chagas), negative (heal...

The actual composition and cross-broad layout of each peptide pools derived from the N protein (upper panel).

Taisheng Li (269024)
Jing Xie (180526)
Yuxian He (277042)
Hongwei Fan (379379)
Laurence Baril (186664)
Zhifeng Qiu (269028)
Yang Han (269027)
Wenbing Xu (297922)
Weihong Zhang (188305)
Hui You (379380)
Yanling Zuo (379381)
Qing Fang (254280)
Jian Yu (141239)
Zhiwei Chen (254191)
Linqi Zhang (350238)

February 2013

<div>The 57 peptides (one is not listed) were pooled into 15 groups, 7 of which (NX1-7) are liste...

Peptide data from observed proteomic differences between E. histolytica and E. dispar.

Paul H. Davis (373403)
Minghe Chen (373404)
Xiaochun Zhang (51139)
C. Graham Clark (60047)
R. Reid Townsend (233235)
Samuel L. Stanley Jr. (373405)

February 2013

Peptide data from observed proteomic differences between E. histolytica and E. dispar</...

Proteomic results and Gene Ontology analysis for five wild-type femurs.

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

Proteins identified in wild-type mouse femurs were analyzed using ConsensusPathDB-mouse (Release MM1...

S2 Table -

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

A) Protein report for MS analysis of 5 Wild-type femur lysates showing 2108 protein identifications ...

S1 Table -

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

A) Protein report for MS analysis of technical injections of femur lysate showing 712 protein identi...

S9 Table -

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

A) Spectral Library created for hydroxyproline analysis from DDA acquisitions of 5 WT mouse femurs c...

S4 Table -

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

A) All 1633 identified proteins from the Female vs Male comparison of mouse femurs with ≥2 unique pe...

Sequences of the 17 Peptides used for the first model in the discovery set.

Mirelle E. E. Bröker (446915)
Zarina S. Lalmahomed (446916)
Henk P. Roest (446917)
Nick A. van Huizen (346685)
Lennard J. M. Dekker (246338)
Wim Calame (446918)
Cornelis Verhoef (446919)
Jan N. M. IJzermans (283157)
Theo M. Luider (242944)

August 2013

The amino acids which are underscored are hydroxylated. The two peptides which are written in bol...

Proteotyping results of the twelve representative strains included in the study (averages of triplicate analyses).

Roger Karlsson (366815)
Lucia Gonzales-Siles (5990771)
Margarita Gomila (644851)
Antonio Busquets (669903)
Francisco Salvà-Serra (4683589)
Daniel Jaén-Luchoro (4683583)
Hedvig E. Jakobsson (251280)
Anders Karlsson (217161)
Fredrik Boulund (4411366)
Erik Kristiansson (75825)
Edward R. B. Moore (426748)

December 2018

The number of species-unique peptide matches and accuracies (%), using the two databases are shown i...

Peptide detection significance levels using experimental spectra of the 103 peptides with and without any post-translational modifications (PTMs) against a standard target database across database search programs (OMSSA, X! Tandem, and Crux).

Malik N. Akhtar (646360)
Bruce R. Southey (19329)
Per E. Andrén (39579)
Jonathan V. Sweedler (19333)
Sandra L. Rodriguez-Zas (19332)

October 2014

aSignificance threshold (t) for matched to be considered significant at an E-value or p...

Fig. 2 in Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry

John M. Asara
Mary H. Schweitzer
Lisa M. Freimark
Matthew Phillips
Lewis C. Cantley

April 2007

Fig. 2. Collagen peptide sequences unique to extinct mastodon identified by LC/MS/MS. (A) The four c...

Additional file 1: of A survey of proteomic biomarkers for heterotopic ossification in blood serum

Laura Edsberg (4004981)
Erin Crowgey (4004984)
Patrick Osborn (4004978)
Jennifer Wyffels (4004975)

May 2017

Selection reaction monitoring (SRM) peptide transition parameters for protein candidates. Transition...

Supplemental Data Set 2. The complete unfiltered set of 60366 p-peptides with matched protein id, their metadata, p-15-mers, annotation from PPDB, SUBA3 consensus prediction and assignment to one of seven locations.

Klaas J. van Wijk (90285)
Giulia Friso (90282)
Dirk Walther (32589)
Waltraud X. Schulze (1555645)

November 2016

Supplemental Data Set 2. The complete unfiltered set of 60366 p-peptides with matched protein id, th...

Peptides identified by the MS/MS tandem analysis.

Paola Cecchini (344060)
Regina Tavano (344061)
Patrizia Polverino de Laureto (110842)
Susanna Franzoso (344062)
Cristina Mazzon (344063)
Paolo Montanari (344064)
Emanuele Papini (344065)

February 2013

Peptides identified by the MS/MS analysis and recognized by Mascot. In the columns are indicated,...

Summary of peptide reactivities.

Santiago J. Carmona (110864)
Paula A. Sartor (110865)
María S. Leguizamón (110866)
Oscar E. Campetella (110867)
Fernán Agüero (14139)

December 2012

The table summarizes the results from the screening of pools of positive (Chagas), negative (heal...

The actual composition and cross-broad layout of each peptide pools derived from the N protein (upper panel).

Taisheng Li (269024)
Jing Xie (180526)
Yuxian He (277042)
Hongwei Fan (379379)
Laurence Baril (186664)
Zhifeng Qiu (269028)
Yang Han (269027)
Wenbing Xu (297922)
Weihong Zhang (188305)
Hui You (379380)
Yanling Zuo (379381)
Qing Fang (254280)
Jian Yu (141239)
Zhiwei Chen (254191)
Linqi Zhang (350238)

February 2013

<div>The 57 peptides (one is not listed) were pooled into 15 groups, 7 of which (NX1-7) are liste...

Peptide data from observed proteomic differences between E. histolytica and E. dispar.

Paul H. Davis (373403)
Minghe Chen (373404)
Xiaochun Zhang (51139)
C. Graham Clark (60047)
R. Reid Townsend (233235)
Samuel L. Stanley Jr. (373405)

February 2013

Peptide data from observed proteomic differences between E. histolytica and E. dispar</...

Proteomic results and Gene Ontology analysis for five wild-type femurs.

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

Proteins identified in wild-type mouse femurs were analyzed using ConsensusPathDB-mouse (Release MM1...

S6 Table -

Abstract

Extracted data

S6 Table -

Abstract

Extracted data

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