S2 Table - | ORKG Ask

Additional file 2: of Elucidation of cross-species proteomic effects in human and hominin bone proteome identification through a bioinformatics experiment

F. Welker (4870180)

February 2018

Additional parameters of unidentified, mutable PSMs. (a) Peptide isoelectric point (pI). (b) Peptide...

MS-spectra analyzed using PEAKS 7.5 in combination with MS2peptides-DB and http://proteome2pathogen.com/.

Armand Paauw (255206)
Holger C. Scholz (9118844)
Roos H. Mars-Groenendijk (3087930)
Lennard J. M. Dekker (8041340)
Theo M. Luider (242944)
Hans C. van Leeuwen (2734018)

January 2023

MS-spectra analyzed using PEAKS 7.5 in combination with MS2peptides-DB and http://proteome2pathogen....

MOESM2 of Quantitative proteomic analyses of CD4+ and CD8+ T cells reveal differentially expressed proteins in multiple sclerosis patients and healthy controls

Tone Berge (301374)
Anna Eriksson (176834)
Ina Brorson (6683087)
Einar Høgestøl (6683093)
Pål Berg-Hansen (385615)
Anne Døskeland (6683096)
Olav Mjaavatten (3465629)
Steffan Bos (3505187)
Hanne Harbo (3505193)
Frode Berven (2007676)

May 2019

Additional file 2: Table S2. Proteins from CD8+ T cells differentially expressed in MS patients and ...

S1 Table -

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

A) Protein report for MS analysis of technical injections of femur lysate showing 712 protein identi...

S6 Table -

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

A) Total peptide report for 5 Wild-type femurs from hydroxyproline analysis showing 31171 precursor ...

S4 Table -

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

A) All 1633 identified proteins from the Female vs Male comparison of mouse femurs with ≥2 unique pe...

MOESM2 of Synovial fluid proteome in rheumatoid arthritis

Mitali Bhattacharjee (1590298)
Lavanya Balakrishnan (265316)
Santosh Renuse (2131054)
Jayshree Advani (1590295)
Renu Goel (265322)
Gajanan Sathe (3434171)
T. Keshava Prasad (3475487)
Bipin Nair (153500)
Ramesh Jois (3475484)
Subramanian Shankar (3475481)
Akhilesh Pandey (14293)

June 2016

Additional file 2: Table S2. List of proteins and their corresponding peptides identified in the stu...

Immune system proteins and their respective accession numbers in the swab sample of the Maiden identified by mass spectrometry.

Angelique Corthals (147778)
Antonius Koller (147783)
Dwight W. Martin (147788)
Robert Rieger (147792)
Emily I. Chen (147797)
Mario Bernaski (147802)
Gabriella Recagno (147807)
Liliana M. Dávalos (147812)

July 2012

Numbers in the last three columns indicate the number of unique peptides, the number of spectra o...

Table 1. Proteins identified by mass spectrometry.

Mizhir Atallah (182465)
Alon Krispin (182467)
Uriel Trahtemberg (182469)
Sandrine Ben-Hamron (182470)
Amir Grau (182472)
Inna Verbovetski (182473)
Dror Mevorach (182475)

February 2012

Analysis of proteins identified by mass spectrometry. Sequences corresponding to the identified p...

Proteomic results and Gene Ontology analysis for five wild-type femurs.

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

Proteins identified in wild-type mouse femurs were analyzed using ConsensusPathDB-mouse (Release MM1...

Peptides identified by the MS/MS tandem analysis.

Paola Cecchini (344060)
Regina Tavano (344061)
Patrizia Polverino de Laureto (110842)
Susanna Franzoso (344062)
Cristina Mazzon (344063)
Paolo Montanari (344064)
Emanuele Papini (344065)

February 2013

Peptides identified by the MS/MS analysis and recognized by Mascot. In the columns are indicated,...

Protein Identification and Differential Peptide Quantification

Eric Bartee (50506)
Ashley McCormack (379537)
Klaus Früh (106067)

February 2013

<div>(A) Approximately 500–700 proteins were identified by at least one peptide in each fraction;...

2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments-1

Jens Allmer (94478)
Sebastian Kuhlgert (94479)
Michael Hippler (94480)

December 2011

T, the name and additional information is presented (here B1-1 see top box). Those proteins which pa...

Interacting proteins with LHX2, OTX2, BRG1 based on immunoprecipitation followed by mass spectrometry.

Mazal Cohen-Gulkar (14439002)
Ahuvit David (811479)
Naama Messika-Gold (9589273)
Mai Eshel (14439005)
Shai Ovadia (14439008)
Nitay Zuk-Bar (14439011)
Maria Idelson (132162)
Yamit Cohen-Tayar (569713)
Benjamin Reubinoff (253084)
Tamar Ziv (168326)
Meir Shamay (126274)
Ran Elkon (83638)
Ruth Ashery-Padan (389817)

January 2023

The table lists the intensities (Log2) of peptides—identified in the IP-MS interactome analysis. Eac...

Additional file 1: of A survey of proteomic biomarkers for heterotopic ossification in blood serum

Laura Edsberg (4004981)
Erin Crowgey (4004984)
Patrick Osborn (4004978)
Jennifer Wyffels (4004975)

May 2017

Selection reaction monitoring (SRM) peptide transition parameters for protein candidates. Transition...

Additional file 2: of Elucidation of cross-species proteomic effects in human and hominin bone proteome identification through a bioinformatics experiment

F. Welker (4870180)

February 2018

Additional parameters of unidentified, mutable PSMs. (a) Peptide isoelectric point (pI). (b) Peptide...

MS-spectra analyzed using PEAKS 7.5 in combination with MS2peptides-DB and http://proteome2pathogen.com/.

Armand Paauw (255206)
Holger C. Scholz (9118844)
Roos H. Mars-Groenendijk (3087930)
Lennard J. M. Dekker (8041340)
Theo M. Luider (242944)
Hans C. van Leeuwen (2734018)

January 2023

MS-spectra analyzed using PEAKS 7.5 in combination with MS2peptides-DB and http://proteome2pathogen....

MOESM2 of Quantitative proteomic analyses of CD4+ and CD8+ T cells reveal differentially expressed proteins in multiple sclerosis patients and healthy controls

Tone Berge (301374)
Anna Eriksson (176834)
Ina Brorson (6683087)
Einar Høgestøl (6683093)
Pål Berg-Hansen (385615)
Anne Døskeland (6683096)
Olav Mjaavatten (3465629)
Steffan Bos (3505187)
Hanne Harbo (3505193)
Frode Berven (2007676)

May 2019

Additional file 2: Table S2. Proteins from CD8+ T cells differentially expressed in MS patients and ...

S1 Table -

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

A) Protein report for MS analysis of technical injections of femur lysate showing 712 protein identi...

S6 Table -

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

A) Total peptide report for 5 Wild-type femurs from hydroxyproline analysis showing 31171 precursor ...

S4 Table -

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

A) All 1633 identified proteins from the Female vs Male comparison of mouse femurs with ≥2 unique pe...

MOESM2 of Synovial fluid proteome in rheumatoid arthritis

Mitali Bhattacharjee (1590298)
Lavanya Balakrishnan (265316)
Santosh Renuse (2131054)
Jayshree Advani (1590295)
Renu Goel (265322)
Gajanan Sathe (3434171)
T. Keshava Prasad (3475487)
Bipin Nair (153500)
Ramesh Jois (3475484)
Subramanian Shankar (3475481)
Akhilesh Pandey (14293)

June 2016

Additional file 2: Table S2. List of proteins and their corresponding peptides identified in the stu...

Immune system proteins and their respective accession numbers in the swab sample of the Maiden identified by mass spectrometry.

Angelique Corthals (147778)
Antonius Koller (147783)
Dwight W. Martin (147788)
Robert Rieger (147792)
Emily I. Chen (147797)
Mario Bernaski (147802)
Gabriella Recagno (147807)
Liliana M. Dávalos (147812)

July 2012

Numbers in the last three columns indicate the number of unique peptides, the number of spectra o...

Table 1. Proteins identified by mass spectrometry.

Mizhir Atallah (182465)
Alon Krispin (182467)
Uriel Trahtemberg (182469)
Sandrine Ben-Hamron (182470)
Amir Grau (182472)
Inna Verbovetski (182473)
Dror Mevorach (182475)

February 2012

Analysis of proteins identified by mass spectrometry. Sequences corresponding to the identified p...

Proteomic results and Gene Ontology analysis for five wild-type femurs.

Jacob P. Rose (17125167)
Charles A. Schurman (4386745)
Christina D. King (8879360)
Joanna Bons (9458931)
Sandip K. Patel (13041543)
Jordan B. Burton (17125170)
Amy O’Broin (17125173)
Tamara Alliston (265049)
Birgit Schilling (31153)

October 2023

Proteins identified in wild-type mouse femurs were analyzed using ConsensusPathDB-mouse (Release MM1...

Peptides identified by the MS/MS tandem analysis.

Paola Cecchini (344060)
Regina Tavano (344061)
Patrizia Polverino de Laureto (110842)
Susanna Franzoso (344062)
Cristina Mazzon (344063)
Paolo Montanari (344064)
Emanuele Papini (344065)

February 2013

Peptides identified by the MS/MS analysis and recognized by Mascot. In the columns are indicated,...

Protein Identification and Differential Peptide Quantification

Eric Bartee (50506)
Ashley McCormack (379537)
Klaus Früh (106067)

February 2013

<div>(A) Approximately 500–700 proteins were identified by at least one peptide in each fraction;...

2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments-1

Jens Allmer (94478)
Sebastian Kuhlgert (94479)
Michael Hippler (94480)

December 2011

T, the name and additional information is presented (here B1-1 see top box). Those proteins which pa...

Interacting proteins with LHX2, OTX2, BRG1 based on immunoprecipitation followed by mass spectrometry.

Mazal Cohen-Gulkar (14439002)
Ahuvit David (811479)
Naama Messika-Gold (9589273)
Mai Eshel (14439005)
Shai Ovadia (14439008)
Nitay Zuk-Bar (14439011)
Maria Idelson (132162)
Yamit Cohen-Tayar (569713)
Benjamin Reubinoff (253084)
Tamar Ziv (168326)
Meir Shamay (126274)
Ran Elkon (83638)
Ruth Ashery-Padan (389817)

January 2023

The table lists the intensities (Log2) of peptides—identified in the IP-MS interactome analysis. Eac...

Additional file 1: of A survey of proteomic biomarkers for heterotopic ossification in blood serum

Laura Edsberg (4004981)
Erin Crowgey (4004984)
Patrick Osborn (4004978)
Jennifer Wyffels (4004975)

May 2017

Selection reaction monitoring (SRM) peptide transition parameters for protein candidates. Transition...

Additional file 2: of Elucidation of cross-species proteomic effects in human and hominin bone proteome identification through a bioinformatics experiment

F. Welker (4870180)

February 2018

Additional parameters of unidentified, mutable PSMs. (a) Peptide isoelectric point (pI). (b) Peptide...

MS-spectra analyzed using PEAKS 7.5 in combination with MS2peptides-DB and http://proteome2pathogen.com/.

Armand Paauw (255206)
Holger C. Scholz (9118844)
Roos H. Mars-Groenendijk (3087930)
Lennard J. M. Dekker (8041340)
Theo M. Luider (242944)
Hans C. van Leeuwen (2734018)

January 2023

MS-spectra analyzed using PEAKS 7.5 in combination with MS2peptides-DB and http://proteome2pathogen....

MOESM2 of Quantitative proteomic analyses of CD4+ and CD8+ T cells reveal differentially expressed proteins in multiple sclerosis patients and healthy controls

Tone Berge (301374)
Anna Eriksson (176834)
Ina Brorson (6683087)
Einar Høgestøl (6683093)
Pål Berg-Hansen (385615)
Anne Døskeland (6683096)
Olav Mjaavatten (3465629)
Steffan Bos (3505187)
Hanne Harbo (3505193)
Frode Berven (2007676)

May 2019

Additional file 2: Table S2. Proteins from CD8+ T cells differentially expressed in MS patients and ...

S2 Table -

Abstract

Extracted data

S2 Table -

Abstract

Extracted data

Related items

Related items