BridgeDb: BridgeDb 2.1.0 released

ChangeLog 2.1.0 (2015-08-06) Update SwissLipids, BRENDA and wikidata Update InChiKey to PRIMARY id Fix designations for KEGG Reactome and PubChem-bioassay Added the InChIKey as DataSource, allowing at some point WikiPathways to be searched on InChIKey Added SwissLipids Added more detail on how to get DataSource's Also compiles the BatchMapper now Added 'Plasmodium falciparum' to the Organism enumeration Added alternative methods that allow getting attributes not just from the data source of the Xref, but from any or all of the data sources in the BridgeDb mapping file Added the regular expression for the Wikidata identifier Added Wikidata as DataSource Preferably take the existing system code, removing use of deprecated methods Added an initial two upgrade notes for BridgeDb 2.0 Made the method setStrictDataSourceChecking deprecated, indicating it is not regular API and will disappear Introduced a compatibility mode, allowing BridgeDb to silently ignore inconsistencies and contradictions in DataSource registrations, e.g. with old Derby files Added column headers and brief descriptions for datasources QC tool: Now only shows the removed IDs when you run it with '-DshowRemovedIDs=true' More detailed change report (number of new genes added and genes removed) Use the same relative values as with file size changes: as change to the old number of identifiers Also report the full name Updated the QC tool to BridgeDb 2.