BridgeDb: BridgeDb v2.0.0 released

ChangeLog 2.0.0 (2014-11-21) Added the upcoming 10 alphanum ID format for Uniprot, see http://www.uniprot.org/docs/sp_soon.htm (2013-11-22) Added XMetDB (http://www.xmetdb.org/) as data source Removes redundant Sp code from build list Add Sugar Beet and Barley Added web service method to retrieve datasources.txt file Added ability to write a DataSource file in txt format Changed BioDataSource.init calls to DataSourceTxt.init() calls Split read funtionality out of Depricated BioDataSource UrnBased changed to mirianBase None miriam UrnBase no longer allowed Although call using syscode are ignored Added Identifiers.org methods to same information Stopped Unintended creation of Datasource with null sysCode. Added stricker methods to xref as well Stricketer builder where appropriate getUrl replaced with a safer methods Alernative name and description now saved to sysCode getByFullName and getBySystem code replaced with safer methods DataSource Registration now much Stricter. SysCode and fullName may not be null SysCode and fullName must be unigue. (or already paired) Added Oryza Indica as well as with the NCBI taxonomy terms Add a number of Miriam URN bases not yet in DataSource.txt Added 'Oryza sativa Japonica Group' updated Ensembl linkout pattern to support plants, fungi, and bacteria Support WP identifiers with revision supplement Read the regex patterns too Updated the Unigene website URL to remove the redirect step Fixed a race condition: initialization of Organism and BioDataSource depended on each other A method using deprecated data should be deprecated too Updated the MIRIAM urn for the Gene Ontology Added taxonomy support for Organism's Addressed some issues identified by Christian in the deprecated API Copied the Uniprot ID pattern from MIRIAM Include transient deps in the distribution Move OSGi bundles to transien