Publication date
February 2022
DOIAbstract
PTM table can be median-centered Improved handling of bad runs (e.g. 0 target or decoy PSMs for a sample) Percolator FDR calculation used, and PEP output included Bugfixe
PTM table can be median-centered Improved handling of bad runs (e.g. 0 target or decoy PSMs for a sample) Percolator FDR calculation used, and PEP output included Bugfixe
High-quality labeled datasets for applying machine and deep learning to several tasks in MS based pr...
High-quality labeled datasets for applying machine and deep learning to several tasks in MS based pr...
<p>a) the number of parameterized PTMs by type (outer annulus) together with the number of parameter...
Flanking sequences for PTMs added to PTM peptide tables (7aa + PTM-aa + 7aa, for each PTM of a pepti...
TMT18 quant TIMS isobaric quant Throw out decoys that are targets before search Small fixe
Mainly an ENSG FDR bugfix, and some more low-quality MS support (to not crash but show QC
Bugfix in MS1 quant where too large retention time tolerance was used MS1 quant RT/mz tolerances par...
reruns with new or replaced sets more quantification options more SVG replacing base64 images in QC ...
Output table changes (order and sorting, removing X__POOL) Bugfixes Add support for TIMSTOF data Aut...
More tolerance to set names with spaces etc Dynamic memory MSGF Error message for single-channel sam...
High-quality labeled datasets for applying machine and deep learning to several tasks in MS based pr...
PSM tables associated with the publication "Multi-attribute Glycan Identification and FDR Control fo...
Search results supporting the manuscript "MSFragger-Labile: A Flexible Method to Improve Labile PTM ...
High-quality labeled datasets for applying machine and deep learning to several tasks in MS based pr...
PSM tables associated with the publication "Multi-attribute Glycan Identification and FDR Control fo...
High-quality labeled datasets for applying machine and deep learning to several tasks in MS based pr...
High-quality labeled datasets for applying machine and deep learning to several tasks in MS based pr...
<p>a) the number of parameterized PTMs by type (outer annulus) together with the number of parameter...
Flanking sequences for PTMs added to PTM peptide tables (7aa + PTM-aa + 7aa, for each PTM of a pepti...
TMT18 quant TIMS isobaric quant Throw out decoys that are targets before search Small fixe
Mainly an ENSG FDR bugfix, and some more low-quality MS support (to not crash but show QC
Bugfix in MS1 quant where too large retention time tolerance was used MS1 quant RT/mz tolerances par...
reruns with new or replaced sets more quantification options more SVG replacing base64 images in QC ...
Output table changes (order and sorting, removing X__POOL) Bugfixes Add support for TIMSTOF data Aut...
More tolerance to set names with spaces etc Dynamic memory MSGF Error message for single-channel sam...
High-quality labeled datasets for applying machine and deep learning to several tasks in MS based pr...
PSM tables associated with the publication "Multi-attribute Glycan Identification and FDR Control fo...
Search results supporting the manuscript "MSFragger-Labile: A Flexible Method to Improve Labile PTM ...
High-quality labeled datasets for applying machine and deep learning to several tasks in MS based pr...
PSM tables associated with the publication "Multi-attribute Glycan Identification and FDR Control fo...
High-quality labeled datasets for applying machine and deep learning to several tasks in MS based pr...
High-quality labeled datasets for applying machine and deep learning to several tasks in MS based pr...
<p>a) the number of parameterized PTMs by type (outer annulus) together with the number of parameter...
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