Added now using filelock for improved thread safety now checking if every API/FTP/HTTP(S) is accessible before proceeding genomepy search improvements: text search now accepts regex, and multiple substrings (space separated) are unordered. taxonomy search now returns all hits that start with the given number. Changed switched to pyproject.toml + hatchling for packaging Fixed updated the README and CLI documentation to mention the Local provide
Changed removed unused keys from Ensembl and UCSC databases to reduce their size Fixed added a re...
[0.9.2] - 2021-01-28 Added progress bars for downloading and bgzipping (the slow stuff) spinner to ...
[0.8.3] - 2020-06-03 Fixed Fixed bug introduced by fixing a bug: Provider-specific options for geno...
Added now using filelock for improved thread safety now checking if every API/FTP/HTTP(S) is access...
[0.8.1] - 2020-05-11 Added Now using the UCSC rest API genomepy search now accepts taxonomy IDs gen...
[0.9.3] - 2021-02-03 Changed URL provider got better at searching for annotation files NCBI provide...
[0.8.0] - 2020-05-11 Added Now using the UCSC rest API genomepy search now accepts taxonomy IDs gen...
[0.9.1] - 2020-09-01 Added genomepy install flag -k/--keep-alt to keep alternative regions argparse...
Added genomepy search and genomepy genomes can now return the (unfiltered) absolute genome size wit...
[0.8.2] - 2020-05-25 Fixed Genome.sizes and Genome.gaps are now populated automatically. backwards ...
Added genomepy search now accepts the --exact flag genomepy.Annotation.attributes() returns a list ...
[0.9.0] - 2020-09-01 Added check to see if providers are online + error message if not automatic pr...
Added genomepy.Annotation.lengths() to retrieve the gene/transcript lengths. genomepy.Annotation.fr...
[0.10.0] - 2021-07-30 Added Annotation class, containing regex filter (genomepy.Annotation.filter_r...
Added extened docstrings GENCODE support (GENCODE gene annotations with UCSC genomes) only contains...
Changed removed unused keys from Ensembl and UCSC databases to reduce their size Fixed added a re...
[0.9.2] - 2021-01-28 Added progress bars for downloading and bgzipping (the slow stuff) spinner to ...
[0.8.3] - 2020-06-03 Fixed Fixed bug introduced by fixing a bug: Provider-specific options for geno...
Added now using filelock for improved thread safety now checking if every API/FTP/HTTP(S) is access...
[0.8.1] - 2020-05-11 Added Now using the UCSC rest API genomepy search now accepts taxonomy IDs gen...
[0.9.3] - 2021-02-03 Changed URL provider got better at searching for annotation files NCBI provide...
[0.8.0] - 2020-05-11 Added Now using the UCSC rest API genomepy search now accepts taxonomy IDs gen...
[0.9.1] - 2020-09-01 Added genomepy install flag -k/--keep-alt to keep alternative regions argparse...
Added genomepy search and genomepy genomes can now return the (unfiltered) absolute genome size wit...
[0.8.2] - 2020-05-25 Fixed Genome.sizes and Genome.gaps are now populated automatically. backwards ...
Added genomepy search now accepts the --exact flag genomepy.Annotation.attributes() returns a list ...
[0.9.0] - 2020-09-01 Added check to see if providers are online + error message if not automatic pr...
Added genomepy.Annotation.lengths() to retrieve the gene/transcript lengths. genomepy.Annotation.fr...
[0.10.0] - 2021-07-30 Added Annotation class, containing regex filter (genomepy.Annotation.filter_r...
Added extened docstrings GENCODE support (GENCODE gene annotations with UCSC genomes) only contains...
Changed removed unused keys from Ensembl and UCSC databases to reduce their size Fixed added a re...
[0.9.2] - 2021-01-28 Added progress bars for downloading and bgzipping (the slow stuff) spinner to ...
[0.8.3] - 2020-06-03 Fixed Fixed bug introduced by fixing a bug: Provider-specific options for geno...