[0.9.2] - 2021-01-28 Added progress bars for downloading and bgzipping (the slow stuff) spinner to indexing plugins (the slowest stuff) Changed removed dependency of psutils added dependency of tqdm Fixed an oopsie in the regex filter functions slowing down install. rm_rf and mkdir_p to behave more like their namesakes
Added #729 Added Bowtie2 flag --maxins for PE mapping modern DNA mapping contexts Fixed Corrected...
What's Changed Make atlas handle large gene catalogs using parquet and pyfastx (Fix #515) parquet ...
[0.8.3] - 2020-06-03 Fixed Fixed bug introduced by fixing a bug: Provider-specific options for geno...
[0.9.1] - 2020-09-01 Added genomepy install flag -k/--keep-alt to keep alternative regions argparse...
[0.8.1] - 2020-05-11 Added Now using the UCSC rest API genomepy search now accepts taxonomy IDs gen...
[0.8.0] - 2020-05-11 Added Now using the UCSC rest API genomepy search now accepts taxonomy IDs gen...
Added now using filelock for improved thread safety now checking if every API/FTP/HTTP(S) is access...
[0.10.0] - 2021-07-30 Added Annotation class, containing regex filter (genomepy.Annotation.filter_r...
Added you can now tune the cache expiration time in the config create a config with genomepy config...
[0.7.2] - 2019-03-31 Fixes Fix minor issue with hg19 wrong blacklist url Ensembl downloads over htt...
[0.8.2] - 2020-05-25 Fixed Genome.sizes and Genome.gaps are now populated automatically. backwards ...
Added genomepy search and genomepy genomes can now return the (unfiltered) absolute genome size wit...
[0.9.0] - 2020-09-01 Added check to see if providers are online + error message if not automatic pr...
Added genomepy.Annotation.lengths() to retrieve the gene/transcript lengths. genomepy.Annotation.fr...
[installation]: Downgraded scipy (scipy<1.9) in order to handle (https://github.com/biocore/scikit-b...
Added #729 Added Bowtie2 flag --maxins for PE mapping modern DNA mapping contexts Fixed Corrected...
What's Changed Make atlas handle large gene catalogs using parquet and pyfastx (Fix #515) parquet ...
[0.8.3] - 2020-06-03 Fixed Fixed bug introduced by fixing a bug: Provider-specific options for geno...
[0.9.1] - 2020-09-01 Added genomepy install flag -k/--keep-alt to keep alternative regions argparse...
[0.8.1] - 2020-05-11 Added Now using the UCSC rest API genomepy search now accepts taxonomy IDs gen...
[0.8.0] - 2020-05-11 Added Now using the UCSC rest API genomepy search now accepts taxonomy IDs gen...
Added now using filelock for improved thread safety now checking if every API/FTP/HTTP(S) is access...
[0.10.0] - 2021-07-30 Added Annotation class, containing regex filter (genomepy.Annotation.filter_r...
Added you can now tune the cache expiration time in the config create a config with genomepy config...
[0.7.2] - 2019-03-31 Fixes Fix minor issue with hg19 wrong blacklist url Ensembl downloads over htt...
[0.8.2] - 2020-05-25 Fixed Genome.sizes and Genome.gaps are now populated automatically. backwards ...
Added genomepy search and genomepy genomes can now return the (unfiltered) absolute genome size wit...
[0.9.0] - 2020-09-01 Added check to see if providers are online + error message if not automatic pr...
Added genomepy.Annotation.lengths() to retrieve the gene/transcript lengths. genomepy.Annotation.fr...
[installation]: Downgraded scipy (scipy<1.9) in order to handle (https://github.com/biocore/scikit-b...
Added #729 Added Bowtie2 flag --maxins for PE mapping modern DNA mapping contexts Fixed Corrected...
What's Changed Make atlas handle large gene catalogs using parquet and pyfastx (Fix #515) parquet ...
[0.8.3] - 2020-06-03 Fixed Fixed bug introduced by fixing a bug: Provider-specific options for geno...
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