Changed removed unused keys from Ensembl and UCSC databases to reduce their size Fixed added a retry for initializing the diskcache (seq2science/issues/887) can now find ensembl urls for genomes not using url_names properly (#205
[0.5.5] - 2019-03-19 Added Plugin for downloading genome blacklists (from Kundaje lab). Fixed Fix...
A bug in the shell script to select the ensembl yeast genome annotation was discovered and fixed
The Ensembl software resources are a stable infrastructure to store, access and manipulate genome as...
Added genomepy search now accepts the --exact flag genomepy.Annotation.attributes() returns a list ...
[0.8.3] - 2020-06-03 Fixed Fixed bug introduced by fixing a bug: Provider-specific options for geno...
[0.9.1] - 2020-09-01 Added genomepy install flag -k/--keep-alt to keep alternative regions argparse...
[0.8.2] - 2020-05-25 Fixed Genome.sizes and Genome.gaps are now populated automatically. backwards ...
Added you can now tune the cache expiration time in the config create a config with genomepy config...
[0.7.2] - 2019-03-31 Fixes Fix minor issue with hg19 wrong blacklist url Ensembl downloads over htt...
Added now using filelock for improved thread safety now checking if every API/FTP/HTTP(S) is access...
Added genomepy search and genomepy genomes can now return the (unfiltered) absolute genome size wit...
[0.9.0] - 2020-09-01 Added check to see if providers are online + error message if not automatic pr...
[0.8.1] - 2020-05-11 Added Now using the UCSC rest API genomepy search now accepts taxonomy IDs gen...
[0.8.0] - 2020-05-11 Added Now using the UCSC rest API genomepy search now accepts taxonomy IDs gen...
[0.9.3] - 2021-02-03 Changed URL provider got better at searching for annotation files NCBI provide...
[0.5.5] - 2019-03-19 Added Plugin for downloading genome blacklists (from Kundaje lab). Fixed Fix...
A bug in the shell script to select the ensembl yeast genome annotation was discovered and fixed
The Ensembl software resources are a stable infrastructure to store, access and manipulate genome as...
Added genomepy search now accepts the --exact flag genomepy.Annotation.attributes() returns a list ...
[0.8.3] - 2020-06-03 Fixed Fixed bug introduced by fixing a bug: Provider-specific options for geno...
[0.9.1] - 2020-09-01 Added genomepy install flag -k/--keep-alt to keep alternative regions argparse...
[0.8.2] - 2020-05-25 Fixed Genome.sizes and Genome.gaps are now populated automatically. backwards ...
Added you can now tune the cache expiration time in the config create a config with genomepy config...
[0.7.2] - 2019-03-31 Fixes Fix minor issue with hg19 wrong blacklist url Ensembl downloads over htt...
Added now using filelock for improved thread safety now checking if every API/FTP/HTTP(S) is access...
Added genomepy search and genomepy genomes can now return the (unfiltered) absolute genome size wit...
[0.9.0] - 2020-09-01 Added check to see if providers are online + error message if not automatic pr...
[0.8.1] - 2020-05-11 Added Now using the UCSC rest API genomepy search now accepts taxonomy IDs gen...
[0.8.0] - 2020-05-11 Added Now using the UCSC rest API genomepy search now accepts taxonomy IDs gen...
[0.9.3] - 2021-02-03 Changed URL provider got better at searching for annotation files NCBI provide...
[0.5.5] - 2019-03-19 Added Plugin for downloading genome blacklists (from Kundaje lab). Fixed Fix...
A bug in the shell script to select the ensembl yeast genome annotation was discovered and fixed
The Ensembl software resources are a stable infrastructure to store, access and manipulate genome as...
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