Added Major #640 - Added a pre-metagenomic screening filtering of low-sequence complexity reads with bbduk Major #583 - Added mapDamage2 rescaling of BAM files to remove damage Updated usage (merging files) and workflow images reflecting new functionality. Fixed Removed leftover old DockerHub push CI commands. #627 - Added de Barros Damgaard citation to README #630 - Better handling of Qualimap memory requirements and error strategy. Fixed some incomplete schema options to ensure users supply valid input values Major #638 Fixed inverted circularfilter filtering (previously filtering would happen by default, not when requested by user as originally recorded in documentation) DeDup: Fixed Null Pointer Bug in DeDup by updating t...
Added #317 Added bcftools stats for general genotyping statistics of VCF files #651 - Adds removal ...
Added Major Automated cloud tests with large-scale data on AWS Major Re-wrote input logic to accept...
Added Fixed #882 Define DSL1 execution explicitly, as new versions Nextflow made DSL2 default (♥ to...
Added #687 - Adds Kraken2 unique kmer counting report #676 - Refactor help message / summary messag...
Added #722 - Adds bwa -o flag for more flexibility in bwa parameters #736 - Add printing of multiqc...
[2.4.3] - 2022-03-24 Added Fixed #828 Improved error message if required metagenomic screening para...
[2.4.1] - 2021-11-30 Added #805 Changes to bam_trim options to allow flexible trimming by library s...
Added #349 - Added option enabling platypus formatted output of pmdtools misincorporation frequenci...
2.0 "Kaufbeuren" - 2018-10-17 Initial release of nf-core/eager featuring: FastQC read quality contr...
Added #729 Added Bowtie2 flag --maxins for PE mapping modern DNA mapping contexts Fixed Corrected...
Added #933 Added support for customising --seq-length in mapDamage rescaling (♥ to @ashildv for req...
[2.0.7] - 2019-06-10 Added #189 - Outputing unmapped reads in a fastq files with the --strip_input_...
[2.0.6] - 2019-03-05 Added #152 - Clarified --complexity_filter flag to be specifically for poly G ...
[2.0.5] - 2019-01-30 Added #127 - Added a second testcase for testing the pipeline properly #129 - ...
Added Fixed #654 - Fixed some values in JSON schema (used in launch GUI) not passing validation c...
Added #317 Added bcftools stats for general genotyping statistics of VCF files #651 - Adds removal ...
Added Major Automated cloud tests with large-scale data on AWS Major Re-wrote input logic to accept...
Added Fixed #882 Define DSL1 execution explicitly, as new versions Nextflow made DSL2 default (♥ to...
Added #687 - Adds Kraken2 unique kmer counting report #676 - Refactor help message / summary messag...
Added #722 - Adds bwa -o flag for more flexibility in bwa parameters #736 - Add printing of multiqc...
[2.4.3] - 2022-03-24 Added Fixed #828 Improved error message if required metagenomic screening para...
[2.4.1] - 2021-11-30 Added #805 Changes to bam_trim options to allow flexible trimming by library s...
Added #349 - Added option enabling platypus formatted output of pmdtools misincorporation frequenci...
2.0 "Kaufbeuren" - 2018-10-17 Initial release of nf-core/eager featuring: FastQC read quality contr...
Added #729 Added Bowtie2 flag --maxins for PE mapping modern DNA mapping contexts Fixed Corrected...
Added #933 Added support for customising --seq-length in mapDamage rescaling (♥ to @ashildv for req...
[2.0.7] - 2019-06-10 Added #189 - Outputing unmapped reads in a fastq files with the --strip_input_...
[2.0.6] - 2019-03-05 Added #152 - Clarified --complexity_filter flag to be specifically for poly G ...
[2.0.5] - 2019-01-30 Added #127 - Added a second testcase for testing the pipeline properly #129 - ...
Added Fixed #654 - Fixed some values in JSON schema (used in launch GUI) not passing validation c...
Added #317 Added bcftools stats for general genotyping statistics of VCF files #651 - Adds removal ...
Added Major Automated cloud tests with large-scale data on AWS Major Re-wrote input logic to accept...
Added Fixed #882 Define DSL1 execution explicitly, as new versions Nextflow made DSL2 default (♥ to...