Added #349 - Added option enabling platypus formatted output of pmdtools misincorporation frequencies. Fixed #719 - Fix filename for bam output of mapdamage_rescaling #707 - Fix typo in UnifiedGenotyper IndelRealigner command Fixed some Java tools not following process memory specifications Updated template to nf-core/tools 1.13.2 #711 - Fix conditional execution preventing multivcfanalyze to run #714 - Fixes bug in nuc contamination by upgrading to latest MultiQC v1.10.1 bugfix release Dependencies Deprecate
Added #63 Replace local bcl_demultiplex subworkflow with nf-core version (@matthdsm) #63 Add bases_...
Fixed #591 - Fixed offset underlines in lane merging diagram in docs #592 - Fixed issue where suppl...
[2.4.2] - 2022-01-24 Added Fixed #824 Fixes large memory footprint of bedtools coverage calculation...
Added #722 - Adds bwa -o flag for more flexibility in bwa parameters #736 - Add printing of multiqc...
Added #687 - Adds Kraken2 unique kmer counting report #676 - Refactor help message / summary messag...
Added #933 Added support for customising --seq-length in mapDamage rescaling (♥ to @ashildv for req...
Added Major #640 - Added a pre-metagenomic screening filtering of low-sequence complexity reads w...
Added #317 Added bcftools stats for general genotyping statistics of VCF files #651 - Adds removal ...
[2.4.3] - 2022-03-24 Added Fixed #828 Improved error message if required metagenomic screening para...
Added #729 Added Bowtie2 flag --maxins for PE mapping modern DNA mapping contexts Fixed Corrected...
Added Fixed #654 - Fixed some values in JSON schema (used in launch GUI) not passing validation c...
Added Fixed #983 Bump pygments version due to incompatibility with MultiQC dependencies (♥ to @MinL...
Added Fixed #882 Define DSL1 execution explicitly, as new versions Nextflow made DSL2 default (♥ to...
[2.4.1] - 2021-11-30 Added #805 Changes to bam_trim options to allow flexible trimming by library s...
[2.0.7] - 2019-06-10 Added #189 - Outputing unmapped reads in a fastq files with the --strip_input_...
Added #63 Replace local bcl_demultiplex subworkflow with nf-core version (@matthdsm) #63 Add bases_...
Fixed #591 - Fixed offset underlines in lane merging diagram in docs #592 - Fixed issue where suppl...
[2.4.2] - 2022-01-24 Added Fixed #824 Fixes large memory footprint of bedtools coverage calculation...
Added #722 - Adds bwa -o flag for more flexibility in bwa parameters #736 - Add printing of multiqc...
Added #687 - Adds Kraken2 unique kmer counting report #676 - Refactor help message / summary messag...
Added #933 Added support for customising --seq-length in mapDamage rescaling (♥ to @ashildv for req...
Added Major #640 - Added a pre-metagenomic screening filtering of low-sequence complexity reads w...
Added #317 Added bcftools stats for general genotyping statistics of VCF files #651 - Adds removal ...
[2.4.3] - 2022-03-24 Added Fixed #828 Improved error message if required metagenomic screening para...
Added #729 Added Bowtie2 flag --maxins for PE mapping modern DNA mapping contexts Fixed Corrected...
Added Fixed #654 - Fixed some values in JSON schema (used in launch GUI) not passing validation c...
Added Fixed #983 Bump pygments version due to incompatibility with MultiQC dependencies (♥ to @MinL...
Added Fixed #882 Define DSL1 execution explicitly, as new versions Nextflow made DSL2 default (♥ to...
[2.4.1] - 2021-11-30 Added #805 Changes to bam_trim options to allow flexible trimming by library s...
[2.0.7] - 2019-06-10 Added #189 - Outputing unmapped reads in a fastq files with the --strip_input_...
Added #63 Replace local bcl_demultiplex subworkflow with nf-core version (@matthdsm) #63 Add bases_...
Fixed #591 - Fixed offset underlines in lane merging diagram in docs #592 - Fixed issue where suppl...
[2.4.2] - 2022-01-24 Added Fixed #824 Fixes large memory footprint of bedtools coverage calculation...