[2.0.5] - 2019-01-30 Added #127 - Added a second testcase for testing the pipeline properly #129 - Support BAM files as input format #131 - Support different reference genome file extensions Fixed #128 - Fixed reference genome handling errors Dependencies Picard Tools 2.18.21 -> 2.18.23 R-Markdown 1.10 -> 1.11 FastP 0.19.5 -> 0.19.
Restructure binning subworkflow in preparation for aDNA workflow and extended binning Add ancient DN...
Added Major #640 - Added a pre-metagenomic screening filtering of low-sequence complexity reads w...
[2.1.0] - 2022-07-21 Credits Special thanks to the following for their contributions to the release:...
[2.4.3] - 2022-03-24 Added Fixed #828 Improved error message if required metagenomic screening para...
[2.4.1] - 2021-11-30 Added #805 Changes to bam_trim options to allow flexible trimming by library s...
Pipeline Updates Major pipeline rewrite to use DSL2 with shared nf-core/modules. Warning: Breaking c...
[2.1.0] - Ravensburg - 2020-03-05 Added Added Support for automated tests using GitHub Actions, rep...
nf-core/eager release 2.0.4 - 2019-01-07 Added #111 - Allow Zipped FastA reference input #113 - All...
[2.0.7] - 2019-06-10 Added #189 - Outputing unmapped reads in a fastq files with the --strip_input_...
Added Major Automated cloud tests with large-scale data on AWS Major Re-wrote input logic to accept...
[2.0.3] - 2018-12-12 Added #80 - BWA Index file handling #77 - Lots of documentation updates by @jf...
Pipeline Updates ⚙️ Dramatically increase the default process time config requests for Bismark and ...
Added #317 Added bcftools stats for general genotyping statistics of VCF files #651 - Adds removal ...
v1.0.0 - 2019-09-19 Add figures to output documentation Add samtools stats for genome alignments Ad...
The usage of the pipeline has been updated. It is recommended to reads the usage.md document. Added ...
Restructure binning subworkflow in preparation for aDNA workflow and extended binning Add ancient DN...
Added Major #640 - Added a pre-metagenomic screening filtering of low-sequence complexity reads w...
[2.1.0] - 2022-07-21 Credits Special thanks to the following for their contributions to the release:...
[2.4.3] - 2022-03-24 Added Fixed #828 Improved error message if required metagenomic screening para...
[2.4.1] - 2021-11-30 Added #805 Changes to bam_trim options to allow flexible trimming by library s...
Pipeline Updates Major pipeline rewrite to use DSL2 with shared nf-core/modules. Warning: Breaking c...
[2.1.0] - Ravensburg - 2020-03-05 Added Added Support for automated tests using GitHub Actions, rep...
nf-core/eager release 2.0.4 - 2019-01-07 Added #111 - Allow Zipped FastA reference input #113 - All...
[2.0.7] - 2019-06-10 Added #189 - Outputing unmapped reads in a fastq files with the --strip_input_...
Added Major Automated cloud tests with large-scale data on AWS Major Re-wrote input logic to accept...
[2.0.3] - 2018-12-12 Added #80 - BWA Index file handling #77 - Lots of documentation updates by @jf...
Pipeline Updates ⚙️ Dramatically increase the default process time config requests for Bismark and ...
Added #317 Added bcftools stats for general genotyping statistics of VCF files #651 - Adds removal ...
v1.0.0 - 2019-09-19 Add figures to output documentation Add samtools stats for genome alignments Ad...
The usage of the pipeline has been updated. It is recommended to reads the usage.md document. Added ...
Restructure binning subworkflow in preparation for aDNA workflow and extended binning Add ancient DN...
Added Major #640 - Added a pre-metagenomic screening filtering of low-sequence complexity reads w...
[2.1.0] - 2022-07-21 Credits Special thanks to the following for their contributions to the release:...
DOI
Add to ORKG