New features: reports.py plot_coverage — creates a coverage plot for a mapped .bam file. Multiple chart styles are supported, and data can be drawn as a line, filled line, or point series reports.py align_and_plot_coverage — performs a quick BWA alignment between an unmapped bam file and a reference .fasta file, and then creates a coverage plot via reports.py plot_coverage. Example chart
New: The Snakemake pipeline can now source database files from S3, GS, or SFTP if given protocol-pr...
A needle-plot (aka stem-plot or lollipop-plot) plots each data point as a big dot and adds a vertica...
New: The Snakemake pipeline can now source database files from S3, GS, or SFTP if given protocol-pr...
A set of scripts and tools for the analysis of viral NGS data. More detailed documentation can be f...
Fixed: CheckIlluminaDirectory now creates symlinks only if necessary Fix plot_coverage for cases wh...
New: The functions to plot coverage in reports.py can now limit graph bounds via --plotXLimits and ...
New: binned coverage plot option in reports.py align_and_plot via --binLargePlots (#957) (thanks to...
New: assembly.order_and_orient() now supports --outAlternateContigs to output sequences (in FASTA...
A set of scripts and tools for the analysis of viral NGS data. More detailed documentation can be f...
A needle-plot (aka stem-plot or lollipop-plot) plots each data point as a big dot and adds a vertica...
This release of Plotly.NET focuses mainly on QOL improvements and keeping up with plotly.js changes....
A needle-plot (aka stem-plot or lollipop-plot) plots each data point as a big dot and adds a vertica...
New: add --unpairedOutFastqto taxon_filter.py trim_trimmomatic: two optional parameters for specif...
New: New BWA-based LCA metagenomics function: metagenomics. align_rna() Align to metagenomics bwa i...
API Changes How you map to calculated aesthetics has changed. Use the ~plotnine.aes.after_stat func...
New: The Snakemake pipeline can now source database files from S3, GS, or SFTP if given protocol-pr...
A needle-plot (aka stem-plot or lollipop-plot) plots each data point as a big dot and adds a vertica...
New: The Snakemake pipeline can now source database files from S3, GS, or SFTP if given protocol-pr...
A set of scripts and tools for the analysis of viral NGS data. More detailed documentation can be f...
Fixed: CheckIlluminaDirectory now creates symlinks only if necessary Fix plot_coverage for cases wh...
New: The functions to plot coverage in reports.py can now limit graph bounds via --plotXLimits and ...
New: binned coverage plot option in reports.py align_and_plot via --binLargePlots (#957) (thanks to...
New: assembly.order_and_orient() now supports --outAlternateContigs to output sequences (in FASTA...
A set of scripts and tools for the analysis of viral NGS data. More detailed documentation can be f...
A needle-plot (aka stem-plot or lollipop-plot) plots each data point as a big dot and adds a vertica...
This release of Plotly.NET focuses mainly on QOL improvements and keeping up with plotly.js changes....
A needle-plot (aka stem-plot or lollipop-plot) plots each data point as a big dot and adds a vertica...
New: add --unpairedOutFastqto taxon_filter.py trim_trimmomatic: two optional parameters for specif...
New: New BWA-based LCA metagenomics function: metagenomics. align_rna() Align to metagenomics bwa i...
API Changes How you map to calculated aesthetics has changed. Use the ~plotnine.aes.after_stat func...
New: The Snakemake pipeline can now source database files from S3, GS, or SFTP if given protocol-pr...
A needle-plot (aka stem-plot or lollipop-plot) plots each data point as a big dot and adds a vertica...
New: The Snakemake pipeline can now source database files from S3, GS, or SFTP if given protocol-pr...