updating bit-get-accessions-from-GTDB https://github.com/AstrobioMike/bit/commit/41adaa0f77387d3f2f55d9ad100ad7cca3ff0984 download was failing due to the GTDB switch from 122 to 53 marker-genes for archaea (https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/RELEASE_NOTES
update to gtdb version file download (handled by helper program gtt-check-or-setup-GTDB-files) to co...
added comprehensive helper program gtt-get-accessions-from-GTDB to facilitate accessing and utilizin...
requiring and using muscle5 now thanks to note from @jianshu93 (https://github.com/AstrobioMike/GToT...
updating bit-get-accessions-from-GTDB https://github.com/AstrobioMike/bit/commit/41adaa0f77387d3f2f5...
updating gtt-get-accessions-from-GTDB https://github.com/AstrobioMike/GToTree/commit/bbaec5893342e05...
improvements to working with GTDB (in main script and in gtt-get-accessions-from-GTDB) improvements ...
Minor bug fixes; added output file of genes not found in any genome (if any) Codebase: https://githu...
<ul> <li>adding <code>bit-get-accessions-from-GTDB</code></li> </ul...
better checking and error message improvement when input accessions file format has problems, and wh...
<ul> <li>adding <code>bit-get-accessions-from-GTDB</code></li> <li&...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
minor bug fix: modifying when gtotree terminates due to an input genome shorter than 100,000 bps to ...
More posix compatibility fixes Added output table of hit-counts per target-gene per genome Codebase:...
genbank and refseq assembly summary tables are now cached instead of downloaded every run (https://g...
update to gtdb version file download (handled by helper program gtt-check-or-setup-GTDB-files) to co...
added comprehensive helper program gtt-get-accessions-from-GTDB to facilitate accessing and utilizin...
requiring and using muscle5 now thanks to note from @jianshu93 (https://github.com/AstrobioMike/GToT...
updating bit-get-accessions-from-GTDB https://github.com/AstrobioMike/bit/commit/41adaa0f77387d3f2f5...
updating gtt-get-accessions-from-GTDB https://github.com/AstrobioMike/GToTree/commit/bbaec5893342e05...
improvements to working with GTDB (in main script and in gtt-get-accessions-from-GTDB) improvements ...
Minor bug fixes; added output file of genes not found in any genome (if any) Codebase: https://githu...
<ul> <li>adding <code>bit-get-accessions-from-GTDB</code></li> </ul...
better checking and error message improvement when input accessions file format has problems, and wh...
<ul> <li>adding <code>bit-get-accessions-from-GTDB</code></li> <li&...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
minor bug fix: modifying when gtotree terminates due to an input genome shorter than 100,000 bps to ...
More posix compatibility fixes Added output table of hit-counts per target-gene per genome Codebase:...
genbank and refseq assembly summary tables are now cached instead of downloaded every run (https://g...
update to gtdb version file download (handled by helper program gtt-check-or-setup-GTDB-files) to co...
added comprehensive helper program gtt-get-accessions-from-GTDB to facilitate accessing and utilizin...
requiring and using muscle5 now thanks to note from @jianshu93 (https://github.com/AstrobioMike/GToT...