v.0.2.7 Added a NEWS.md file to track changes to the package. New function: individuals2strata. Several functions in stackr and assigner requires a strata argument, i.e. a data frame with the individuals and associated groupings. You can do it manually, however, if your individuals have a consistent naming scheme (e.g. SPECIES-POPULATION-MATURITY-YEAR-ID = CHI-QUE-ADU-2014-020), use this function to rapidly create a strata file. New function: tidy_genomic_data. Transform common genomic dataset format in a tidy data frame. Used internally in stackr and assigner and might be of interest for users. New function: read_long_tidy_wide. Read genomic data frames in long/tidy and wide format. Used internally in stackr and assigner and might b...
v.0.4.5 temporary fix to tidy_genomic_data to read unconventional Tassel VCF new function ibdg_fh ...
All catalog and variant files produced by STACKS that formed the basis of the population genomic ana...
v.0.2.8 While changing some lines with tidyr::spread and tidyr::gather for data.table::dcast.data....
v.0.2.7 Added a NEWS.md file to track changes to the package. New function: individuals2strata. Se...
v.0.2.7 Added a NEWS.md file to track changes to the package. New function: individuals2strata. Se...
v.0.3.0 Update that makes my coding life easier. Several internal functions to convert from a tidy...
v.0.4.2 gtypes object from [strataG] (https://github.com/EricArcher/strataG) package can now be rea...
v.0.4.6 I'm pleased to announce that stackr parallel mode now works with Windows! Nothing to instal...
Introducing haplo2gsi_sim function. Conversion of STACKS haplotypes file into a gsi_sim data input f...
This new release enable map-independent imputations of a VCF file created by STACKS. Two options are...
v.0.3.6 fixed a bug in vcf_imputation, the function now calls genomic_converter with all the bell...
v.0.2.7 you need to update stackr to v.0.2.7 to appreciate this new version of assigner. updated a...
What's Changed updates in ArchR2Signac functions to read fragments file not only from 10X Genomics,...
Raw genotype data for all identified catalog entries. Each line gives genotypes for a single catalog...
The tool is available in the GenOuest Galaxy instance here\ud \ud This program, part of the STACKS p...
v.0.4.5 temporary fix to tidy_genomic_data to read unconventional Tassel VCF new function ibdg_fh ...
All catalog and variant files produced by STACKS that formed the basis of the population genomic ana...
v.0.2.8 While changing some lines with tidyr::spread and tidyr::gather for data.table::dcast.data....
v.0.2.7 Added a NEWS.md file to track changes to the package. New function: individuals2strata. Se...
v.0.2.7 Added a NEWS.md file to track changes to the package. New function: individuals2strata. Se...
v.0.3.0 Update that makes my coding life easier. Several internal functions to convert from a tidy...
v.0.4.2 gtypes object from [strataG] (https://github.com/EricArcher/strataG) package can now be rea...
v.0.4.6 I'm pleased to announce that stackr parallel mode now works with Windows! Nothing to instal...
Introducing haplo2gsi_sim function. Conversion of STACKS haplotypes file into a gsi_sim data input f...
This new release enable map-independent imputations of a VCF file created by STACKS. Two options are...
v.0.3.6 fixed a bug in vcf_imputation, the function now calls genomic_converter with all the bell...
v.0.2.7 you need to update stackr to v.0.2.7 to appreciate this new version of assigner. updated a...
What's Changed updates in ArchR2Signac functions to read fragments file not only from 10X Genomics,...
Raw genotype data for all identified catalog entries. Each line gives genotypes for a single catalog...
The tool is available in the GenOuest Galaxy instance here\ud \ud This program, part of the STACKS p...
v.0.4.5 temporary fix to tidy_genomic_data to read unconventional Tassel VCF new function ibdg_fh ...
All catalog and variant files produced by STACKS that formed the basis of the population genomic ana...
v.0.2.8 While changing some lines with tidyr::spread and tidyr::gather for data.table::dcast.data....