Add to ORKGThe tool is available in the GenOuest Galaxy instance here\ud \ud This program, part of the STACKS pipeline, will be executed in place of the genotypes program when a population is being processed through the pipeline. A map specifiying which individuals belong to which population is submitted to the program and the program will then calculate population genetics statistics, expected/observed heterzygosity, π, and FIS at each nucleotide position. The populations program will compare all..
SNP data files for principal components analyses and summary statistics for pi output from Stacks pi...
This file contains the individuals for which genotypes are to be exported using the populations modu...
METAPOP (http://webs.uvigo.es/anpefi/metapop/) is a desktop application that provides an analysis of...
We ran the program Stacks (http://catchenlab.life.illinois.edu/stacks/; J. Catchen, P. Hohenlohe, S....
<p>and standardized samples (three randomly selected individuals per sub-region; N = 3).</p
All catalog and variant files produced by STACKS that formed the basis of the population genomic ana...
In the absence of tractable theory for predicting how population bottlenecks of longer than one gene...
Summary: WHICHLOCI is a program that determines the relative discriminatory power of alternate genet...
Calculates nucleotide diversity for each population from a STACKS haplotype export file. Run via a b...
Contains scripts and part of the output data of running *Stacks* with the demultiplexed-lane-effect-...
SummaryNext-generation sequencing technologies produce short reads that are either de novo assembled...
This file contains the output from stacks and can be used to export genotypes with the "populations"...
Summary:Wehaveadded twosoftware tools to ourSuiteofNucleotide Analysis Programs (SNAP) for working w...
This text file is a combination of the barcodes file and the "population map" file for the program s...
During evolution, genomes are shaped by a plethora of forces that can leave characteristic signature...
SNP data files for principal components analyses and summary statistics for pi output from Stacks pi...
This file contains the individuals for which genotypes are to be exported using the populations modu...
METAPOP (http://webs.uvigo.es/anpefi/metapop/) is a desktop application that provides an analysis of...
We ran the program Stacks (http://catchenlab.life.illinois.edu/stacks/; J. Catchen, P. Hohenlohe, S....
<p>and standardized samples (three randomly selected individuals per sub-region; N = 3).</p
All catalog and variant files produced by STACKS that formed the basis of the population genomic ana...
In the absence of tractable theory for predicting how population bottlenecks of longer than one gene...
Summary: WHICHLOCI is a program that determines the relative discriminatory power of alternate genet...
Calculates nucleotide diversity for each population from a STACKS haplotype export file. Run via a b...
Contains scripts and part of the output data of running *Stacks* with the demultiplexed-lane-effect-...
SummaryNext-generation sequencing technologies produce short reads that are either de novo assembled...
This file contains the output from stacks and can be used to export genotypes with the "populations"...
Summary:Wehaveadded twosoftware tools to ourSuiteofNucleotide Analysis Programs (SNAP) for working w...
This text file is a combination of the barcodes file and the "population map" file for the program s...
During evolution, genomes are shaped by a plethora of forces that can leave characteristic signature...
SNP data files for principal components analyses and summary statistics for pi output from Stacks pi...
This file contains the individuals for which genotypes are to be exported using the populations modu...
METAPOP (http://webs.uvigo.es/anpefi/metapop/) is a desktop application that provides an analysis of...