JannesSP/magnipore: v1.2.0

Removed Added read5 to internaly handle the input formats: fast5, slow5, blow5 and potentially pod5 in the future magnipore now via pip available more tests testing file formats fast5, slow5 & blow5 testing event aggregation Changed replaced nanopolish eventalign with f5c eventalign pod5 is now available via conda, no need for pip install pod5 anymore Parameters Changed a lot of parameter names were shortened and short parameter names were added --path_to_fast5_first_sample -> --raw_data_first_sample --path_to_reference_first_sample -> --reference_first_sample --first_sample_label -> --label_first_sample --path_to_fast5_sec_sample -> --raw_data_sec_sample --path_to_reference_sec_sample -> --reference_sec_sample --sec_sample_label -> --label_sec_sample --path_to_first_basecalls -> -b1, --basecalls_first_sample --path_to_sec_basecalls -> -b2, --basecalls_sec_sample --path_to_first_sequencing_summary -> -s1, --sequencing_summary_first_sample --path_to_sec_sequencing_summary -> -s2, --sequencing_summary_sec_sample Removed -f5, --fast5_out Added -rna -r10 -km, --kmer_mode