What's Changed Issue 99 by @HobnobMancer in https://github.com/HobnobMancer/cazy_webscraper/pull/102 Fix Issue #99: Improve handling when incurring errors when retrieving data from NCBI Separate invalid IDs to IDs that suffered to failed connections Parse batches containing invalid IDs separately to and before failed connection batches Downloaded protein sequences are cached to a FASTA file. Updated information in the docs on caching. Full Changelog: https://github.com/HobnobMancer/cazy_webscraper/compare/v2.2.3...v2.2.
What's Changed Fix logger by @HobnobMancer in https://github.com/HobnobMancer/cazy_webscraper/pull/...
What's Changed Add getting GTDB taxonomic classifications by @HobnobMancer in https://github.com/Ho...
What's Changed New features Aility to retrieve the latest taxonomic classifications from NCBI Upda...
Fix cazy_webscraper crashing from missing arguments to function calls when retrieving the latest tax...
Fix import error when retrieving protein sequences from NCBI, that was introduced in version 2.2.4 W...
What's Changed Pull Requests Trouble shoot uniprot by @HobnobMancer in https://github.com/HobnobMan...
Summary Fixed incomplete retrieval of proteins from the local CAZyme database that match the specif...
Fix inability to parse Entrez.NotXMLError when retrieving protein sequences from NCBI. What's Change...
Address issue #100 with failing to retrieve data from UniProt, owing to changes to the UniProt API. ...
Bugs and improvements Addresses issue of incomplete retrieval of taxonomy data from NCBI Process of...
What's Changed Issue 111 + 112 uniprot by @HobnobMancer in https://github.com/HobnobMancer/cazy_web...
Fixing bugs when downloading seqs from NCBI: Issue #109 Adding missing args to func calls Accept U...
What's New Retrieve the latest taxonomic information from NCBI Retrieve complete taxonomic lineages ...
What's Changed Add fam seq analysis by @HobnobMancer in https://github.com/HobnobMancer/cazomevolve/...
v2.0.3 Beta release of version 2. Bug fixes Fixes making only the parent dirs of an output database...
What's Changed Fix logger by @HobnobMancer in https://github.com/HobnobMancer/cazy_webscraper/pull/...
What's Changed Add getting GTDB taxonomic classifications by @HobnobMancer in https://github.com/Ho...
What's Changed New features Aility to retrieve the latest taxonomic classifications from NCBI Upda...
Fix cazy_webscraper crashing from missing arguments to function calls when retrieving the latest tax...
Fix import error when retrieving protein sequences from NCBI, that was introduced in version 2.2.4 W...
What's Changed Pull Requests Trouble shoot uniprot by @HobnobMancer in https://github.com/HobnobMan...
Summary Fixed incomplete retrieval of proteins from the local CAZyme database that match the specif...
Fix inability to parse Entrez.NotXMLError when retrieving protein sequences from NCBI. What's Change...
Address issue #100 with failing to retrieve data from UniProt, owing to changes to the UniProt API. ...
Bugs and improvements Addresses issue of incomplete retrieval of taxonomy data from NCBI Process of...
What's Changed Issue 111 + 112 uniprot by @HobnobMancer in https://github.com/HobnobMancer/cazy_web...
Fixing bugs when downloading seqs from NCBI: Issue #109 Adding missing args to func calls Accept U...
What's New Retrieve the latest taxonomic information from NCBI Retrieve complete taxonomic lineages ...
What's Changed Add fam seq analysis by @HobnobMancer in https://github.com/HobnobMancer/cazomevolve/...
v2.0.3 Beta release of version 2. Bug fixes Fixes making only the parent dirs of an output database...
What's Changed Fix logger by @HobnobMancer in https://github.com/HobnobMancer/cazy_webscraper/pull/...
What's Changed Add getting GTDB taxonomic classifications by @HobnobMancer in https://github.com/Ho...
What's Changed New features Aility to retrieve the latest taxonomic classifications from NCBI Upda...