Allow definition of re-usable expressions in scenarions (via a new key "expressions:", see https://varlociraptor.github.io). Remove ability to parallelize Varlociraptor via --threads. This never properly saturated the given cores and caused some overhead. Instead, we recommend to parallelize in scatter/gather style via rbt vcf-split, see https://varlociraptor.github.io). resolution: can now be skipped in scenarios. For continuous universes, this will then assume a resolution of 100, for discrete universes resolution isn't used anyway
Improvements to SNV and MNV calling: in case of reads with indels, perform a realignment to properly...
Bug Fixes erroneous integral boundary adjustment when having small VAF intervals and only very few ...
Infer missing antisense breakends (sometimes callers only report one direction although the other is...
Allow definition of re-usable expressions in scenarions (via a new key "expressions:", see https://v...
Allow parallelization via setting the number of threads. BCF output is now unsorted, and must be sor...
Features improved formula simplification for negations which can provide major speedups and fixes a...
Allow to set reference buffer size (--reference-buffer-size), for improved parallelization when call...
Add support for inversions, deletions and breakends. Slightly modified CLI options
Features added VAF log fold change and comparison operators to the scenario event grammar (#202) (0...
⚠ BREAKING CHANGES when reporting observations, provide ref and alt support as kass raftery scores ...
Features adaptive integration (speeding up the evaluation of complex scenarios) (#199) (8043f94) B...
Features added ability to omit MAPQ adjustment for known variants (varlociraptor preprocess variant...
Fixed a bug in the new prior implementation that led to almost infinite filling of a result cache, l...
Features refinement of homopolymer error model (for increased specificity) (#246) (380245d) Bug Fi...
Bug Fixes fix bug in homopolymer error detection that has led to wrong homopolymer error calls. Thi...
Improvements to SNV and MNV calling: in case of reads with indels, perform a realignment to properly...
Bug Fixes erroneous integral boundary adjustment when having small VAF intervals and only very few ...
Infer missing antisense breakends (sometimes callers only report one direction although the other is...
Allow definition of re-usable expressions in scenarions (via a new key "expressions:", see https://v...
Allow parallelization via setting the number of threads. BCF output is now unsorted, and must be sor...
Features improved formula simplification for negations which can provide major speedups and fixes a...
Allow to set reference buffer size (--reference-buffer-size), for improved parallelization when call...
Add support for inversions, deletions and breakends. Slightly modified CLI options
Features added VAF log fold change and comparison operators to the scenario event grammar (#202) (0...
⚠ BREAKING CHANGES when reporting observations, provide ref and alt support as kass raftery scores ...
Features adaptive integration (speeding up the evaluation of complex scenarios) (#199) (8043f94) B...
Features added ability to omit MAPQ adjustment for known variants (varlociraptor preprocess variant...
Fixed a bug in the new prior implementation that led to almost infinite filling of a result cache, l...
Features refinement of homopolymer error model (for increased specificity) (#246) (380245d) Bug Fi...
Bug Fixes fix bug in homopolymer error detection that has led to wrong homopolymer error calls. Thi...
Improvements to SNV and MNV calling: in case of reads with indels, perform a realignment to properly...
Bug Fixes erroneous integral boundary adjustment when having small VAF intervals and only very few ...
Infer missing antisense breakends (sometimes callers only report one direction although the other is...