Mainly minor debug and improved detection of incorrect command line options. Minor updates to documentation. Resolves issues correctly skipping reads which have not been assigned (#191 & #273). This involves the addition of the --assigned-status-tag option Testing for OSX has been dropped due to unresolved issues with travis. In line with major python packages (e.g https://www.numpy.org/neps/nep-0014-dropping-python2.7-proposal.html), support for python 2 will be dropped from January 1st 2019
Improves run time for large networks (see #94, #31). Thanks to @gpratt for identifying the issue and...
This release fixes a bug introduced when Watchdog was implemented to watch files. The bug would only...
Release notes for libsbgnpy 0.2.2 dropping support of python 3.5 adding support for python 3.9 move...
This release is intended to be a stable release with no plans for significant updates to UMI-tools f...
Debug to support python 3.11. Thank you @sjaenick for bringing this to our attention and testing (#5...
The code has been tweaked to improve run-time. See #69 for a discussion about the changes implemente...
Debug for KeyError when some reads are missing a cell barode tag and stats output required from umi_...
Bugfix whitelist --filtered-out with SE reads threw an unassigned error. Thanks @yech1990 for recti...
A long overdue release covering some minor functionality updates and bugfixes: Additional functional...
The defualt value for --skip_regex was incorrectly formatted. Thanks to @ekernf01 for spotting (#231...
When using the directional method with the group command, the 'top' UMI within each group was not al...
Fix bug in handling command-line arguments when installed using `pip` or `pipx`.Urial (URI Addition ...
Mostly a bugfix release, all users are encourage to update: updated CBC binaries; seems to fix some...
All tests run and pass on my linux and OSX boxes; however, on linux tests work on Travis CI. Impr...
Minor update. Improves detection of duplicate reads with paired end reads, reduces run time with ded...
Improves run time for large networks (see #94, #31). Thanks to @gpratt for identifying the issue and...
This release fixes a bug introduced when Watchdog was implemented to watch files. The bug would only...
Release notes for libsbgnpy 0.2.2 dropping support of python 3.5 adding support for python 3.9 move...
This release is intended to be a stable release with no plans for significant updates to UMI-tools f...
Debug to support python 3.11. Thank you @sjaenick for bringing this to our attention and testing (#5...
The code has been tweaked to improve run-time. See #69 for a discussion about the changes implemente...
Debug for KeyError when some reads are missing a cell barode tag and stats output required from umi_...
Bugfix whitelist --filtered-out with SE reads threw an unassigned error. Thanks @yech1990 for recti...
A long overdue release covering some minor functionality updates and bugfixes: Additional functional...
The defualt value for --skip_regex was incorrectly formatted. Thanks to @ekernf01 for spotting (#231...
When using the directional method with the group command, the 'top' UMI within each group was not al...
Fix bug in handling command-line arguments when installed using `pip` or `pipx`.Urial (URI Addition ...
Mostly a bugfix release, all users are encourage to update: updated CBC binaries; seems to fix some...
All tests run and pass on my linux and OSX boxes; however, on linux tests work on Travis CI. Impr...
Minor update. Improves detection of duplicate reads with paired end reads, reduces run time with ded...
Improves run time for large networks (see #94, #31). Thanks to @gpratt for identifying the issue and...
This release fixes a bug introduced when Watchdog was implemented to watch files. The bug would only...
Release notes for libsbgnpy 0.2.2 dropping support of python 3.5 adding support for python 3.9 move...