Updates include: Add publication citation Add additional datasets and files needed to reproduce the workflows and PathBank license terms Add conda environment file for running the workflows Expand readme and documentation of repository contents Add source code for probabilistic graphical models Additional code cleaning and commentin
<p>These files include the source code and related annotation and pathway data files that can be use...
Pathway Tools is a production-quality software environment for creating a type of model-organism dat...
This dataset contains quantitative pathways developed with the GENeSYS-MOD 3.1 model in the openENTR...
Updates include: Add publication citation Add additional datasets and files needed to reproduce ...
Improvements in this release include: Adding a secondary key to the parameter sort order to make ...
Version 0.5.0 Changes in version 0.5.0 include: Add workflow for compiling, running, and testing...
<p>Background: Computational modelling has become an important tool in understanding biologica...
Changes in version 0.4.0 include: Support three modes of execution: MATLAB, compiled MATLAB execu...
Add notebook with the number of trainable parameters in each model Add notebook showing how to visu...
This release contains minor updates to our compilation of human pathway gene sets. MSigDB was update...
This release features: a more flexible specification for the spatial Markov chains model. More spec...
Code associated with the publication "Single-cell and spatial transcriptomics enables probabilistic ...
Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data
Artifact for PIMFlow. For development environment setup, refer to Docker Hub. The latest codes are ...
LibSBGN is a library for reading, writing and validating maps that use the Systems Biology Graphical...
<p>These files include the source code and related annotation and pathway data files that can be use...
Pathway Tools is a production-quality software environment for creating a type of model-organism dat...
This dataset contains quantitative pathways developed with the GENeSYS-MOD 3.1 model in the openENTR...
Updates include: Add publication citation Add additional datasets and files needed to reproduce ...
Improvements in this release include: Adding a secondary key to the parameter sort order to make ...
Version 0.5.0 Changes in version 0.5.0 include: Add workflow for compiling, running, and testing...
<p>Background: Computational modelling has become an important tool in understanding biologica...
Changes in version 0.4.0 include: Support three modes of execution: MATLAB, compiled MATLAB execu...
Add notebook with the number of trainable parameters in each model Add notebook showing how to visu...
This release contains minor updates to our compilation of human pathway gene sets. MSigDB was update...
This release features: a more flexible specification for the spatial Markov chains model. More spec...
Code associated with the publication "Single-cell and spatial transcriptomics enables probabilistic ...
Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data
Artifact for PIMFlow. For development environment setup, refer to Docker Hub. The latest codes are ...
LibSBGN is a library for reading, writing and validating maps that use the Systems Biology Graphical...
<p>These files include the source code and related annotation and pathway data files that can be use...
Pathway Tools is a production-quality software environment for creating a type of model-organism dat...
This dataset contains quantitative pathways developed with the GENeSYS-MOD 3.1 model in the openENTR...
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