<p>These files include the source code and related annotation and pathway data files that can be used to run iDEP (http://ge-lab.org/idep) locally. These files are current as of October 10, 2018, just before the publication of the paper on BMC Bioinformatics. The most recent version of source code can be found here: <a href="https://github.com/iDEP-SDSU/idep/">https://github.com/iDEP-SDSU/idep/</a>. </p> <p>Note that all files need to be unzipped to the same folder and this line in server.R needs to be changed accordingly:</p> <p># relative path to data files<br> datapath = "../" </p> <p>For questions, please contact us http://ge-lab.org or https://twitter.com/StevenXGe</p
A rapidly growing corpus of formal, computable pathway information can be used to answer important b...
<div><p>A rapidly growing corpus of formal, computable pathway information can be used to answer imp...
An example of R Markdown file generated by iDEP. This code is generated for the analysis of the Hoxa...
These files include the source code and related annotation and pathway data files that can be used t...
Rapid innovation in biotechnology, especially DNA sequencing, holds great promise for revolutionizin...
Abstract Background Cellular processes depend on the function of intracellular molecular networks. T...
Pathway Tools is a production-quality software environment for creating a type of model-organism dat...
Core R functions in iDEP. This code is generated for the analysis of the Hoxa1 dataset. (R 172 kb
Tables S1-S16. Table S1. contains list of 220 species covered by current version of iDEP. Table S2. ...
BackgroundMicroarray technologies have evolved rapidly, enabling biologists to quantify genome-wide ...
Abstract Background RNA-seq is widely used for transcriptomic profiling, but the bioinformatics anal...
In this paper we discuss the properties of biological data, and challenges it poses for data managem...
PathBank (www.pathbank.org) is a new, comprehensive, visually rich pathway database containing more ...
Biological pathways are crucial to much of the scientific research today including the study of spec...
An example of customized R code generated by iDEP. This code is generated for the analysis of the Ho...
A rapidly growing corpus of formal, computable pathway information can be used to answer important b...
<div><p>A rapidly growing corpus of formal, computable pathway information can be used to answer imp...
An example of R Markdown file generated by iDEP. This code is generated for the analysis of the Hoxa...
These files include the source code and related annotation and pathway data files that can be used t...
Rapid innovation in biotechnology, especially DNA sequencing, holds great promise for revolutionizin...
Abstract Background Cellular processes depend on the function of intracellular molecular networks. T...
Pathway Tools is a production-quality software environment for creating a type of model-organism dat...
Core R functions in iDEP. This code is generated for the analysis of the Hoxa1 dataset. (R 172 kb
Tables S1-S16. Table S1. contains list of 220 species covered by current version of iDEP. Table S2. ...
BackgroundMicroarray technologies have evolved rapidly, enabling biologists to quantify genome-wide ...
Abstract Background RNA-seq is widely used for transcriptomic profiling, but the bioinformatics anal...
In this paper we discuss the properties of biological data, and challenges it poses for data managem...
PathBank (www.pathbank.org) is a new, comprehensive, visually rich pathway database containing more ...
Biological pathways are crucial to much of the scientific research today including the study of spec...
An example of customized R code generated by iDEP. This code is generated for the analysis of the Ho...
A rapidly growing corpus of formal, computable pathway information can be used to answer important b...
<div><p>A rapidly growing corpus of formal, computable pathway information can be used to answer imp...
An example of R Markdown file generated by iDEP. This code is generated for the analysis of the Hoxa...