Publication date
February 2023
DOIAbstract
Output from BLASTN searches of complete NCBI Pseudomonas plasmids >200 kbp against sequences of three core pBT2436-like genes. Used for tentative identification of megaplasmids.</p
Output from BLASTN searches of complete NCBI Pseudomonas plasmids >200 kbp against sequences of three core pBT2436-like genes. Used for tentative identification of megaplasmids.</p
Protein sequences formatted for BLAST searches. Used for taxonomy calling on viral and plasmid conti...
<p>The figure shows the BLASTX hits when using the consensus of predicted sequences from AUGUSTUS an...
<p>Most best BLASTX hits against the non-redundant protein database (NCBI) originate from chelicerat...
Details of all Pseudomonas plasmids included on NCBI on 19 December 2022. Those >=200K in length wer...
Metadata available from the NCBI Nucleotide, Bioproject, and Biosample databases for a compiled list...
Sequencing results of genes using BLASTN from NCBI against nucleotide collection.</p
NCBI accession numbers for the various gene and protein sequences used in BLASTn and tBLASTn analyse...
(A) shows the results obtained when regular blast is carried out. PCNA sequences in undefined bacter...
The title of each result contains the name of the strain, contig and nucleotide position of the regi...
<p>The available plasmid sequences that deposited in the NCBI GenBank database involved in each stra...
<p><sup>a</sup>ICEs with regions similar to known single strand origins in RCR plasmids were identif...
A BLASTN search to query the ~93 kb SB sequence bounded by the two end sequences of BAC_145M24 again...
Horizontal gene transfer (HGT) is the exchange of genetic material between bacterial cells. Megaplas...
<p>We used all plant proteins in the NCBI NR database in performing the homology search; for each se...
Supplementary file 1: BLASTN results for protospacers search This file contains the output of the B...
Protein sequences formatted for BLAST searches. Used for taxonomy calling on viral and plasmid conti...
<p>The figure shows the BLASTX hits when using the consensus of predicted sequences from AUGUSTUS an...
<p>Most best BLASTX hits against the non-redundant protein database (NCBI) originate from chelicerat...
Details of all Pseudomonas plasmids included on NCBI on 19 December 2022. Those >=200K in length wer...
Metadata available from the NCBI Nucleotide, Bioproject, and Biosample databases for a compiled list...
Sequencing results of genes using BLASTN from NCBI against nucleotide collection.</p
NCBI accession numbers for the various gene and protein sequences used in BLASTn and tBLASTn analyse...
(A) shows the results obtained when regular blast is carried out. PCNA sequences in undefined bacter...
The title of each result contains the name of the strain, contig and nucleotide position of the regi...
<p>The available plasmid sequences that deposited in the NCBI GenBank database involved in each stra...
<p><sup>a</sup>ICEs with regions similar to known single strand origins in RCR plasmids were identif...
A BLASTN search to query the ~93 kb SB sequence bounded by the two end sequences of BAC_145M24 again...
Horizontal gene transfer (HGT) is the exchange of genetic material between bacterial cells. Megaplas...
<p>We used all plant proteins in the NCBI NR database in performing the homology search; for each se...
Supplementary file 1: BLASTN results for protospacers search This file contains the output of the B...
Protein sequences formatted for BLAST searches. Used for taxonomy calling on viral and plasmid conti...
<p>The figure shows the BLASTX hits when using the consensus of predicted sequences from AUGUSTUS an...
<p>Most best BLASTX hits against the non-redundant protein database (NCBI) originate from chelicerat...
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