apetkau/genomics-data-index: 0.5.0

[cli]: Support for skipping non-existent paths in input file (0.5.0.dev1). [cli]: Support for skipping samples already in an index during the data analysis (0.5.0.dev1). [analysis]: Increased --indel-bias in bcftools mpileup for assembly analysis from default 1.00. This was done since I found I was missing a small number of indels in SARS-CoV-2 analyses (they were being identified as missing/unknown instead). Also decreased quality score filtering from 10 for the same reason (0.5.0.dev2). This requires bcftools >= 1.13. [install]: Fixed broken dependencies on installation (0.5.0.dev3). [api]: Added support for listing counts of samples with unknown features in summary() of features (or unique summaries of features) (0.5.0.dev4). [api]: Renamed parameters include_present and include_unknown to include_present_features and include_unknown_features for SamplesQuery.features_summary() and GenomicsDataIndex.features_summary() to help differentiate it from include_unknown_samples (0.5.0.dev4). [api]: Added TreeStyler.add_spacing() method to add empty columns to tree visual (0.5.0.dev5). [api]: Added ability to adjust width of line used for drawing a tree (0.5.0.dev5). [api]: Added the ability to adjust font size and text of leaf names in a tree (0.5.0.dev5). [api]: Automatically prune tree when making TreeStyler object (0.5.0.dev5). [api]: Updates to pruning of tree when joining external tree to query (0.5.0.dev5). [api]: Add Unknown and Present and Unknown categories to query.features_comparison() output (0.5.0.dev6). [api]: Added use_only_samples_in_categories parameter to query.features_comparison() (0.5.0.dev7). [api]: Added ability to pass a list of features to a query: query.hasa(features_list). This is an alternative to query.hasa(f1).hasa(f2)... (0.5.0.dev8)