[api]: Switch to using SeqRepo proxy from biocommons.seqrepo and removing dependency on ga4gh.vrs. [installation]: Remove fixed version of Perl when installing mlst as it now leads to package dependency issues. [developer]: Removing filtering of warnings. [developer]: Moved project metadata into myproject.toml
Remove dependence on pandas and unused dataframe-related functions Add database of mismatches to bet...
Commits fb6a4e4: Include taxonomy in identifiers and attributes indices (Richard Challis) #100 692c...
Set expression-matrix as optional Fix bash/zsh completion installation Distinguish count file betwee...
[api]: Switch to using SeqRepo proxy from biocommons.seqrepo and removing dependency on ga4gh.vrs. [...
[installation]: Downgraded scipy (scipy<1.9) in order to handle (https://github.com/biocore/scikit-b...
[analysis]: Updated conda environments for analysis to use gdi 0.8.0 (required me to release this ve...
G-language Genome Analysis Environment (G-language GAE) [1,2,3] is a set of Perl libraries for genom...
[api]: Fixed creation of a default ete3 NodeStyle that caused errors if there was no X server
Commits 192c8e3: add sources report (Richard Challis) #289 12ebc9d: restrict sources report to taxo...
[ci]: Fixed GitHub integration tests. [installation]: Switch to the vcfpy library for parsing VCFs. ...
Commits 3524c39: sample index improvements (Richard Challis) 83d6436: add bioproject to sample attr...
Some of the underlying tools don't support CRAM so only removed legacy perl bindings at presen
Guideline for advanced API removal GoA3.4: Optimization and control of advanced treatment Project...
Commits 41f093e: stop indexing value_metadata (Richard Challis) bb4562c: add tooltips and links to ...
[cli]: Support for skipping non-existent paths in input file (0.5.0.dev1). [cli]: Support for skippi...
Remove dependence on pandas and unused dataframe-related functions Add database of mismatches to bet...
Commits fb6a4e4: Include taxonomy in identifiers and attributes indices (Richard Challis) #100 692c...
Set expression-matrix as optional Fix bash/zsh completion installation Distinguish count file betwee...
[api]: Switch to using SeqRepo proxy from biocommons.seqrepo and removing dependency on ga4gh.vrs. [...
[installation]: Downgraded scipy (scipy<1.9) in order to handle (https://github.com/biocore/scikit-b...
[analysis]: Updated conda environments for analysis to use gdi 0.8.0 (required me to release this ve...
G-language Genome Analysis Environment (G-language GAE) [1,2,3] is a set of Perl libraries for genom...
[api]: Fixed creation of a default ete3 NodeStyle that caused errors if there was no X server
Commits 192c8e3: add sources report (Richard Challis) #289 12ebc9d: restrict sources report to taxo...
[ci]: Fixed GitHub integration tests. [installation]: Switch to the vcfpy library for parsing VCFs. ...
Commits 3524c39: sample index improvements (Richard Challis) 83d6436: add bioproject to sample attr...
Some of the underlying tools don't support CRAM so only removed legacy perl bindings at presen
Guideline for advanced API removal GoA3.4: Optimization and control of advanced treatment Project...
Commits 41f093e: stop indexing value_metadata (Richard Challis) bb4562c: add tooltips and links to ...
[cli]: Support for skipping non-existent paths in input file (0.5.0.dev1). [cli]: Support for skippi...
Remove dependence on pandas and unused dataframe-related functions Add database of mismatches to bet...
Commits fb6a4e4: Include taxonomy in identifiers and attributes indices (Richard Challis) #100 692c...
Set expression-matrix as optional Fix bash/zsh completion installation Distinguish count file betwee...
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