Additional file 5 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Additional file 7: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Figure S2. The 9-LOX and 13-LOX specific motif among LOX gene family in four species of cotton. The ...

Additional file 5: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S4. Similarity index of duplicated gene pairs between At to A2 and Dt to D5 subgenomes. (XLSX ...

Additional file 8: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S6. Subcellular localization of LOX gene family in four species of cotton. (XLSX 47 kb

Additional file 4 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 4. Table S4: ID and protein sequences of 60 CNXs family members in cotton

Additional file 2 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 2. Table S2: Analysis of the physical properties of CNX genes in G. hirsutum

Additional file 1 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 1. Table S1: CNX family genes corresponding to four Gossypium species genes renamed

Additional file 9 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 9. Table S9: Relative expression levels of 8 selected genes under four different tim...

Additional file 6 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 6. Table S6: Relative expression levels of CNX family genes after four different abi...

Additional file 8 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 8. Table S8: Relative expression levels of 8 selected genes under four abiotic stres...

Additional file 4: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S3. Chromosomal location of LOX gene family in four species of cotton. (XLSX 11 kb

Additional file 6: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S5. Protein sequences used for construction of phylogenetic tree. (XLSX 31 kb

Additional file 5: of A genome-wide analysis of SWEET gene family in cotton and their expressions under different stresses

Lanjie ZHAO (5590889)
Jinbo YAO (5590892)
Wei CHEN (2902277)
Yan LI (5590895)
Youjun LĂ (5590898)
Yan GUO (5590901)
Junyi WANG (5590904)
Li YUAN (5590907)
Ziyang LIU (5590910)
Yongshan ZHANG (5590913)

August 2018

Table S4. The paralogous pairs of SWEET genes in G. arboreum, G. raimondii, G. hirsutum, and G. barb...

Additional file 19: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles

Kaleem Kakar (4590067)
Zarqa Nawaz (1530955)
Khadija Kakar (4590073)
Essa Ali (2005486)
Abdulwareth Almoneafy (4590070)
Raqeeb Ullah (4590064)
Xue-liang Ren (4590061)
Qing-Yao Shu (4590058)

November 2017

GO term enrichment analysis at level 2 for category: P: Biological process, F: Molecular function an...

Additional file 3: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles

Kaleem Kakar (4590067)
Zarqa Nawaz (1530955)
Khadija Kakar (4590073)
Essa Ali (2005486)
Abdulwareth Almoneafy (4590070)
Raqeeb Ullah (4590064)
Xue-liang Ren (4590061)
Qing-Yao Shu (4590058)

November 2017

Phylogenetic tree of CNGC proteins from B. oleracea (encoded by BoCNGCs). A multiple sequence alignm...

Additional file 5: of Comprehensive analysis of NAC transcription factors uncovers their roles during fiber development and stress response in cotton

Heng Sun (170250)
Meiling Hu (1571296)
Jianying Li (168108)
Lin Chen (54305)
Meng Li (79487)
Shuqin Zhang (402675)
Xianlong Zhang (211930)
Xiyan Yang (420697)

July 2018

Figure S3. The inter-genomic (At and Dt) synteny analysis of NAC genes. Lines represent homologous g...

Additional file 7: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Figure S2. The 9-LOX and 13-LOX specific motif among LOX gene family in four species of cotton. The ...

Additional file 5: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S4. Similarity index of duplicated gene pairs between At to A2 and Dt to D5 subgenomes. (XLSX ...

Additional file 8: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S6. Subcellular localization of LOX gene family in four species of cotton. (XLSX 47 kb

Additional file 4 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 4. Table S4: ID and protein sequences of 60 CNXs family members in cotton

Additional file 2 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 2. Table S2: Analysis of the physical properties of CNX genes in G. hirsutum

Additional file 1 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 1. Table S1: CNX family genes corresponding to four Gossypium species genes renamed

Additional file 9 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 9. Table S9: Relative expression levels of 8 selected genes under four different tim...

Additional file 6 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 6. Table S6: Relative expression levels of CNX family genes after four different abi...

Additional file 8 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 8. Table S8: Relative expression levels of 8 selected genes under four abiotic stres...

Additional file 4: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S3. Chromosomal location of LOX gene family in four species of cotton. (XLSX 11 kb

Additional file 6: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S5. Protein sequences used for construction of phylogenetic tree. (XLSX 31 kb

Additional file 5: of A genome-wide analysis of SWEET gene family in cotton and their expressions under different stresses

Lanjie ZHAO (5590889)
Jinbo YAO (5590892)
Wei CHEN (2902277)
Yan LI (5590895)
Youjun LĂ (5590898)
Yan GUO (5590901)
Junyi WANG (5590904)
Li YUAN (5590907)
Ziyang LIU (5590910)
Yongshan ZHANG (5590913)

August 2018

Table S4. The paralogous pairs of SWEET genes in G. arboreum, G. raimondii, G. hirsutum, and G. barb...

Additional file 19: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles

Kaleem Kakar (4590067)
Zarqa Nawaz (1530955)
Khadija Kakar (4590073)
Essa Ali (2005486)
Abdulwareth Almoneafy (4590070)
Raqeeb Ullah (4590064)
Xue-liang Ren (4590061)
Qing-Yao Shu (4590058)

November 2017

GO term enrichment analysis at level 2 for category: P: Biological process, F: Molecular function an...

Additional file 3: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles

Kaleem Kakar (4590067)
Zarqa Nawaz (1530955)
Khadija Kakar (4590073)
Essa Ali (2005486)
Abdulwareth Almoneafy (4590070)
Raqeeb Ullah (4590064)
Xue-liang Ren (4590061)
Qing-Yao Shu (4590058)

November 2017

Phylogenetic tree of CNGC proteins from B. oleracea (encoded by BoCNGCs). A multiple sequence alignm...

Additional file 5: of Comprehensive analysis of NAC transcription factors uncovers their roles during fiber development and stress response in cotton

Heng Sun (170250)
Meiling Hu (1571296)
Jianying Li (168108)
Lin Chen (54305)
Meng Li (79487)
Shuqin Zhang (402675)
Xianlong Zhang (211930)
Xiyan Yang (420697)

July 2018

Figure S3. The inter-genomic (At and Dt) synteny analysis of NAC genes. Lines represent homologous g...

Additional file 7: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Figure S2. The 9-LOX and 13-LOX specific motif among LOX gene family in four species of cotton. The ...

Additional file 5: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S4. Similarity index of duplicated gene pairs between At to A2 and Dt to D5 subgenomes. (XLSX ...

Additional file 8: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S6. Subcellular localization of LOX gene family in four species of cotton. (XLSX 47 kb

Additional file 5 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Abstract

Extracted data

Additional file 5 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Abstract

Extracted data

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