Additional file 9 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Additional file 8: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S6. Subcellular localization of LOX gene family in four species of cotton. (XLSX 47 kb

Additional file 11: of Genome-wide characterization and phylogenetic analysis of GSK gene family in three species of cotton: evidence for a role of some GSKs in fiber development and responses to stress

Lingling Wang (66269)
Zhaoen Yang (659918)
Bin Zhang (64682)
Daoqian Yu (6050774)
Ji Liu (110659)
Qian Gong (3710617)
Ghulam Qanmber (6050777)
Yi Li (1144)
Lili Lu (408133)
Yongjun Lin (161394)
Zuoren Yang (518304)
Fuguang Li (229466)

December 2018

Table S5.1 GO annotations of the co-expressed genes involved in the weighted gene co-expression sub-...

Additional file 9: of Genome-wide analysis of cotton GH3 subfamily II reveals functional divergence in fiber development, hormone response and plant architecture

Daoqian Yu (6050774)
Ghulam Qanmber (6050777)
Lili Lu (408133)
Lingling Wang (66269)
Jie Li (15030)
Zhaoen Yang (659918)
Zhao Liu (582169)
Yi Li (1144)
Quanjia Chen (3320355)
Venugopal Mendu (184563)
Fuguang Li (229466)
Zuoren Yang (518304)

December 2018

Table S5. The original RNA-seq data for GhGH3 expression pattern analysis. (XLSX 20âkb

Additional file 8 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 8. Table S8: Relative expression levels of 8 selected genes under four abiotic stres...

Additional file 6 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 6. Table S6: Relative expression levels of CNX family genes after four different abi...

Additional file 4 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 4. Table S4: ID and protein sequences of 60 CNXs family members in cotton

Additional file 2 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 2. Table S2: Analysis of the physical properties of CNX genes in G. hirsutum

Additional file 5 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 5. Table S5: CNX family members cis-acting elements and their locations

Additional file 1 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 1. Table S1: CNX family genes corresponding to four Gossypium species genes renamed

Additional file 11: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S9. GhLOX genes tissue expression profile. The data represents the FPKM values. (XLSX 12 kb

Additional file 9: of Comprehensive analysis of NAC transcription factors uncovers their roles during fiber development and stress response in cotton

Heng Sun (170250)
Meiling Hu (1571296)
Jianying Li (168108)
Lin Chen (54305)
Meng Li (79487)
Shuqin Zhang (402675)
Xianlong Zhang (211930)
Xiyan Yang (420697)

July 2018

Figure S4. The expression patterns of NAC genes. (a) The expression patterns of GhNAC genes in diffe...

Additional file 19: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles

Kaleem Kakar (4590067)
Zarqa Nawaz (1530955)
Khadija Kakar (4590073)
Essa Ali (2005486)
Abdulwareth Almoneafy (4590070)
Raqeeb Ullah (4590064)
Xue-liang Ren (4590061)
Qing-Yao Shu (4590058)

November 2017

GO term enrichment analysis at level 2 for category: P: Biological process, F: Molecular function an...

Additional file 7: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Figure S2. The 9-LOX and 13-LOX specific motif among LOX gene family in four species of cotton. The ...

Additional file 8: Table S4. of Genome-wide analysis of WOX genes in upland cotton and their expression pattern under different stresses

Zhaoen Yang (659918)
Qian Gong (3710617)
Wenqiang Qin (4230724)
Zuoren Yang (518304)
Yuan Cheng (72244)
Lili Lu (408133)
Xiaoyang Ge (1696195)
Chaojun Zhang (277452)
Zhixia Wu (229472)
Fuguang Li (229466)

July 2017

Identification of repeat sequences in the region 2,000 bp upstream to 2,000 bp downstream of WOX gen...

Additional file 11: Table S4, 5 and 6. of Evolution, gene expression profiling and 3D modeling of CSLD proteins in cotton

Yanpeng Li (125043)
Tiegang Yang (4238722)
Dandan Dai (1924921)
Ying Hu (14950)
Xiaoyang Guo (1529899)
Hongxia Guo (302081)

July 2017

The source of transcriptome data from G. hirsutum, G. arboreum and G. raimondii. (XLSX 12Â kb

Additional file 8: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S6. Subcellular localization of LOX gene family in four species of cotton. (XLSX 47 kb

Additional file 11: of Genome-wide characterization and phylogenetic analysis of GSK gene family in three species of cotton: evidence for a role of some GSKs in fiber development and responses to stress

Lingling Wang (66269)
Zhaoen Yang (659918)
Bin Zhang (64682)
Daoqian Yu (6050774)
Ji Liu (110659)
Qian Gong (3710617)
Ghulam Qanmber (6050777)
Yi Li (1144)
Lili Lu (408133)
Yongjun Lin (161394)
Zuoren Yang (518304)
Fuguang Li (229466)

December 2018

Table S5.1 GO annotations of the co-expressed genes involved in the weighted gene co-expression sub-...

Additional file 9: of Genome-wide analysis of cotton GH3 subfamily II reveals functional divergence in fiber development, hormone response and plant architecture

Daoqian Yu (6050774)
Ghulam Qanmber (6050777)
Lili Lu (408133)
Lingling Wang (66269)
Jie Li (15030)
Zhaoen Yang (659918)
Zhao Liu (582169)
Yi Li (1144)
Quanjia Chen (3320355)
Venugopal Mendu (184563)
Fuguang Li (229466)
Zuoren Yang (518304)

December 2018

Table S5. The original RNA-seq data for GhGH3 expression pattern analysis. (XLSX 20âkb

Additional file 8 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 8. Table S8: Relative expression levels of 8 selected genes under four abiotic stres...

Additional file 6 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 6. Table S6: Relative expression levels of CNX family genes after four different abi...

Additional file 4 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 4. Table S4: ID and protein sequences of 60 CNXs family members in cotton

Additional file 2 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 2. Table S2: Analysis of the physical properties of CNX genes in G. hirsutum

Additional file 5 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 5. Table S5: CNX family members cis-acting elements and their locations

Additional file 1 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 1. Table S1: CNX family genes corresponding to four Gossypium species genes renamed

Additional file 11: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S9. GhLOX genes tissue expression profile. The data represents the FPKM values. (XLSX 12 kb

Additional file 9: of Comprehensive analysis of NAC transcription factors uncovers their roles during fiber development and stress response in cotton

Heng Sun (170250)
Meiling Hu (1571296)
Jianying Li (168108)
Lin Chen (54305)
Meng Li (79487)
Shuqin Zhang (402675)
Xianlong Zhang (211930)
Xiyan Yang (420697)

July 2018

Figure S4. The expression patterns of NAC genes. (a) The expression patterns of GhNAC genes in diffe...

Additional file 19: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles

Kaleem Kakar (4590067)
Zarqa Nawaz (1530955)
Khadija Kakar (4590073)
Essa Ali (2005486)
Abdulwareth Almoneafy (4590070)
Raqeeb Ullah (4590064)
Xue-liang Ren (4590061)
Qing-Yao Shu (4590058)

November 2017

GO term enrichment analysis at level 2 for category: P: Biological process, F: Molecular function an...

Additional file 7: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Figure S2. The 9-LOX and 13-LOX specific motif among LOX gene family in four species of cotton. The ...

Additional file 8: Table S4. of Genome-wide analysis of WOX genes in upland cotton and their expression pattern under different stresses

Zhaoen Yang (659918)
Qian Gong (3710617)
Wenqiang Qin (4230724)
Zuoren Yang (518304)
Yuan Cheng (72244)
Lili Lu (408133)
Xiaoyang Ge (1696195)
Chaojun Zhang (277452)
Zhixia Wu (229472)
Fuguang Li (229466)

July 2017

Identification of repeat sequences in the region 2,000 bp upstream to 2,000 bp downstream of WOX gen...

Additional file 11: Table S4, 5 and 6. of Evolution, gene expression profiling and 3D modeling of CSLD proteins in cotton

Yanpeng Li (125043)
Tiegang Yang (4238722)
Dandan Dai (1924921)
Ying Hu (14950)
Xiaoyang Guo (1529899)
Hongxia Guo (302081)

July 2017

The source of transcriptome data from G. hirsutum, G. arboreum and G. raimondii. (XLSX 12Â kb

Additional file 8: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S6. Subcellular localization of LOX gene family in four species of cotton. (XLSX 47 kb

Additional file 11: of Genome-wide characterization and phylogenetic analysis of GSK gene family in three species of cotton: evidence for a role of some GSKs in fiber development and responses to stress

Lingling Wang (66269)
Zhaoen Yang (659918)
Bin Zhang (64682)
Daoqian Yu (6050774)
Ji Liu (110659)
Qian Gong (3710617)
Ghulam Qanmber (6050777)
Yi Li (1144)
Lili Lu (408133)
Yongjun Lin (161394)
Zuoren Yang (518304)
Fuguang Li (229466)

December 2018

Table S5.1 GO annotations of the co-expressed genes involved in the weighted gene co-expression sub-...

Additional file 9: of Genome-wide analysis of cotton GH3 subfamily II reveals functional divergence in fiber development, hormone response and plant architecture

Daoqian Yu (6050774)
Ghulam Qanmber (6050777)
Lili Lu (408133)
Lingling Wang (66269)
Jie Li (15030)
Zhaoen Yang (659918)
Zhao Liu (582169)
Yi Li (1144)
Quanjia Chen (3320355)
Venugopal Mendu (184563)
Fuguang Li (229466)
Zuoren Yang (518304)

December 2018

Table S5. The original RNA-seq data for GhGH3 expression pattern analysis. (XLSX 20âkb

Additional file 9 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Abstract

Extracted data

Additional file 9 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Abstract

Extracted data

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