Additional file 8 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Additional file 5: of A genome-wide analysis of SWEET gene family in cotton and their expressions under different stresses

Lanjie ZHAO (5590889)
Jinbo YAO (5590892)
Wei CHEN (2902277)
Yan LI (5590895)
Youjun LĂ (5590898)
Yan GUO (5590901)
Junyi WANG (5590904)
Li YUAN (5590907)
Ziyang LIU (5590910)
Yongshan ZHANG (5590913)

August 2018

Table S4. The paralogous pairs of SWEET genes in G. arboreum, G. raimondii, G. hirsutum, and G. barb...

Additional file 6: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S5. Protein sequences used for construction of phylogenetic tree. (XLSX 31 kb

Additional file 22: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles

Kaleem Kakar (4590067)
Zarqa Nawaz (1530955)
Khadija Kakar (4590073)
Essa Ali (2005486)
Abdulwareth Almoneafy (4590070)
Raqeeb Ullah (4590064)
Xue-liang Ren (4590061)
Qing-Yao Shu (4590058)

November 2017

Cumulative values of expression for Arabidopsis CNGC genes in response to pathogen (biotic) and cold...

Additional file 6 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 6. Table S6: Relative expression levels of CNX family genes after four different abi...

Additional file 9 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 9. Table S9: Relative expression levels of 8 selected genes under four different tim...

Additional file 2 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 2. Table S2: Analysis of the physical properties of CNX genes in G. hirsutum

Additional file 4 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 4. Table S4: ID and protein sequences of 60 CNXs family members in cotton

Additional file 1 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 1. Table S1: CNX family genes corresponding to four Gossypium species genes renamed

Additional file 5 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 5. Table S5: CNX family members cis-acting elements and their locations

Additional file 8: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S6. Subcellular localization of LOX gene family in four species of cotton. (XLSX 47 kb

Additional file 8: Table S4. of Genome-wide analysis of WOX genes in upland cotton and their expression pattern under different stresses

Zhaoen Yang (659918)
Qian Gong (3710617)
Wenqiang Qin (4230724)
Zuoren Yang (518304)
Yuan Cheng (72244)
Lili Lu (408133)
Xiaoyang Ge (1696195)
Chaojun Zhang (277452)
Zhixia Wu (229472)
Fuguang Li (229466)

July 2017

Identification of repeat sequences in the region 2,000 bp upstream to 2,000 bp downstream of WOX gen...

Additional file 11: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S9. GhLOX genes tissue expression profile. The data represents the FPKM values. (XLSX 12 kb

Additional file 7: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Figure S2. The 9-LOX and 13-LOX specific motif among LOX gene family in four species of cotton. The ...

Additional file 1: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S1. Nomenclature of LOX gene family in four species of cotton. (XLSX 11 kb

Additional file 4: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S3. Chromosomal location of LOX gene family in four species of cotton. (XLSX 11 kb

Additional file 5: of A genome-wide analysis of SWEET gene family in cotton and their expressions under different stresses

Lanjie ZHAO (5590889)
Jinbo YAO (5590892)
Wei CHEN (2902277)
Yan LI (5590895)
Youjun LĂ (5590898)
Yan GUO (5590901)
Junyi WANG (5590904)
Li YUAN (5590907)
Ziyang LIU (5590910)
Yongshan ZHANG (5590913)

August 2018

Table S4. The paralogous pairs of SWEET genes in G. arboreum, G. raimondii, G. hirsutum, and G. barb...

Additional file 6: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S5. Protein sequences used for construction of phylogenetic tree. (XLSX 31 kb

Additional file 22: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles

Kaleem Kakar (4590067)
Zarqa Nawaz (1530955)
Khadija Kakar (4590073)
Essa Ali (2005486)
Abdulwareth Almoneafy (4590070)
Raqeeb Ullah (4590064)
Xue-liang Ren (4590061)
Qing-Yao Shu (4590058)

November 2017

Cumulative values of expression for Arabidopsis CNGC genes in response to pathogen (biotic) and cold...

Additional file 6 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 6. Table S6: Relative expression levels of CNX family genes after four different abi...

Additional file 9 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 9. Table S9: Relative expression levels of 8 selected genes under four different tim...

Additional file 2 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 2. Table S2: Analysis of the physical properties of CNX genes in G. hirsutum

Additional file 4 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 4. Table S4: ID and protein sequences of 60 CNXs family members in cotton

Additional file 1 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 1. Table S1: CNX family genes corresponding to four Gossypium species genes renamed

Additional file 5 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Nan Xu (107466)
Hong Zhang (25820)
Yuexin Zhang (640788)
Yapeng Fan (11035149)
Jing Wang (6206297)
Waqar Afzal Malik (10738359)
Cun Rui (11035152)
Mingge Han (11308697)
Xuke Lu (2833106)
Xiugui Chen (2833109)
Junjuan Wang (2833112)
Delong Wang (1794073)
Shuai Wang (109515)
Chao Chen (195669)
Lixue Guo (762312)
Lanjie Zhao (8347956)
Wuwei Ye (11049386)

November 2022

Additional file 5. Table S5: CNX family members cis-acting elements and their locations

Additional file 8: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S6. Subcellular localization of LOX gene family in four species of cotton. (XLSX 47 kb

Additional file 8: Table S4. of Genome-wide analysis of WOX genes in upland cotton and their expression pattern under different stresses

Zhaoen Yang (659918)
Qian Gong (3710617)
Wenqiang Qin (4230724)
Zuoren Yang (518304)
Yuan Cheng (72244)
Lili Lu (408133)
Xiaoyang Ge (1696195)
Chaojun Zhang (277452)
Zhixia Wu (229472)
Fuguang Li (229466)

July 2017

Identification of repeat sequences in the region 2,000 bp upstream to 2,000 bp downstream of WOX gen...

Additional file 11: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S9. GhLOX genes tissue expression profile. The data represents the FPKM values. (XLSX 12 kb

Additional file 7: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Figure S2. The 9-LOX and 13-LOX specific motif among LOX gene family in four species of cotton. The ...

Additional file 1: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S1. Nomenclature of LOX gene family in four species of cotton. (XLSX 11 kb

Additional file 4: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S3. Chromosomal location of LOX gene family in four species of cotton. (XLSX 11 kb

Additional file 5: of A genome-wide analysis of SWEET gene family in cotton and their expressions under different stresses

Lanjie ZHAO (5590889)
Jinbo YAO (5590892)
Wei CHEN (2902277)
Yan LI (5590895)
Youjun LĂ (5590898)
Yan GUO (5590901)
Junyi WANG (5590904)
Li YUAN (5590907)
Ziyang LIU (5590910)
Yongshan ZHANG (5590913)

August 2018

Table S4. The paralogous pairs of SWEET genes in G. arboreum, G. raimondii, G. hirsutum, and G. barb...

Additional file 6: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

Muhammad Shaban (4035110)
Muhammad Ahmed (3436472)
Heng Sun (170250)
Abid Ullah (3144756)
Longfu Zhu (420698)

August 2018

Table S5. Protein sequences used for construction of phylogenetic tree. (XLSX 31 kb

Additional file 22: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles

Kaleem Kakar (4590067)
Zarqa Nawaz (1530955)
Khadija Kakar (4590073)
Essa Ali (2005486)
Abdulwareth Almoneafy (4590070)
Raqeeb Ullah (4590064)
Xue-liang Ren (4590061)
Qing-Yao Shu (4590058)

November 2017

Cumulative values of expression for Arabidopsis CNGC genes in response to pathogen (biotic) and cold...

Additional file 8 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Abstract

Extracted data

Additional file 8 of Functional structure analysis and genome-wide identification of CNX gene family in cotton

Abstract

Extracted data

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