Publication date
July 2017
DOIAbstract
This R script creates a whitelist to input into STACKS v. 1.35, by eliminating SNPs from the last bp positions, as well as loci with exceedingly high genetic diversity based on theta
This R script creates a whitelist to input into STACKS v. 1.35, by eliminating SNPs from the last bp positions, as well as loci with exceedingly high genetic diversity based on theta
This is a custom R script used to count the number of Haplotypic Alleles in a SNP table (in this cas...
R script that rarefies the raw OTU table 100 times to calculate microbiome diversity for individual...
The R script counts each samples' matches (matches.tsv) to the catalog (Batch_7.catalog.tags.tsv) an...
This R script creates a whitelist to input into STACKS v. 1.35, by eliminating SNPs from the last bp...
R script for converting 'vcf' data from SNP pipeline to a single datafile of genotype and read count...
This R script provides analyses comparing patterns of allele frequency change and selection among li...
This R script was used to identify loci with SNPs that are differently fixed between males and femal...
Extracts STACKS that contain SNPs fixed between two groups, where at least a certain number of popul...
The tool is available in the GenOuest Galaxy instance here\ud \ud This program, part of the STACKS p...
R markdown script used to generate the accession means that were used in the genome-wide association...
Contains scripts and part of the output data of running *Stacks* with the demultiplexed-lane-effect-...
This repository holds a short script that allows loading a genetic dataset (genotype calls) derived ...
Script simulates selfing, and creation of full-sibling, half-sibling, and first cousins in proportio...
R script for calculating standardized allelic richness using R package "standarich
With this new version, you are no longer forced to use the haplotype approach to filter the markers....
This is a custom R script used to count the number of Haplotypic Alleles in a SNP table (in this cas...
R script that rarefies the raw OTU table 100 times to calculate microbiome diversity for individual...
The R script counts each samples' matches (matches.tsv) to the catalog (Batch_7.catalog.tags.tsv) an...
This R script creates a whitelist to input into STACKS v. 1.35, by eliminating SNPs from the last bp...
R script for converting 'vcf' data from SNP pipeline to a single datafile of genotype and read count...
This R script provides analyses comparing patterns of allele frequency change and selection among li...
This R script was used to identify loci with SNPs that are differently fixed between males and femal...
Extracts STACKS that contain SNPs fixed between two groups, where at least a certain number of popul...
The tool is available in the GenOuest Galaxy instance here\ud \ud This program, part of the STACKS p...
R markdown script used to generate the accession means that were used in the genome-wide association...
Contains scripts and part of the output data of running *Stacks* with the demultiplexed-lane-effect-...
This repository holds a short script that allows loading a genetic dataset (genotype calls) derived ...
Script simulates selfing, and creation of full-sibling, half-sibling, and first cousins in proportio...
R script for calculating standardized allelic richness using R package "standarich
With this new version, you are no longer forced to use the haplotype approach to filter the markers....
This is a custom R script used to count the number of Haplotypic Alleles in a SNP table (in this cas...
R script that rarefies the raw OTU table 100 times to calculate microbiome diversity for individual...
The R script counts each samples' matches (matches.tsv) to the catalog (Batch_7.catalog.tags.tsv) an...
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