A short R script for loading and transforming genotype Calls from OpenArray technology

This repository holds a short script that allows loading a genetic dataset (genotype calls) derived from OpenArray technology and transforming it into a handly-format file, which can be further imported to PLINK software. Basically, this script carries out a dataset manipulation and transformation from long to wide format. In order to run the script, you will need: An input file derived from OpenArray technology in the long format containing information for three columns (NCBI_SNP_Reference, Sample_ID and Genotype_Call). Change the arguments "aa" and "cc" according to your experimental design and characteristics