The L5_vcf_scaffold_1_to_2.tar.gz folder contains the compressed all-sites VCF file for L5 and the index file for that VCF file. This file contains scaffold 1 and 2. The all-sites VCF file was generated using GATK UnifiedGenotyper, as described in the paper
Vcf files were generated by aligning to a reference using BWA. Genotypes were called using GATK. Fil...
This file contains the variants that were genotyped using GATK3. A GATK hard-filter has been applied
Directory containing the GATK output .vcf file from reference-aligned reads of A. latilabris. Direct...
The L10_vcf_scaffold_1_to_2.tar.gz folder contains the compressed all-sites VCF file for L10 and the...
The L8_vcf_scaffold_1_to_2.tar.gz folder contains the compressed all-sites VCF file for L8 and the i...
The L10_vcf_scaffold_3_to_7.tar.gz folder contains the compressed all-sites VCF file for L10 and the...
The L8_vcf_scaffold_3_to_7.tar.gz folder contains the compressed all-sites VCF file for L8 and the i...
The L1_vcf.tar.gz folder contains the compressed all-sites VCF file for L1 and the index file for th...
The L9_vcf.tar.gz folder contains the compressed all-sites VCF file for L9 and the index file for th...
The indel_vcf.tar.gz folder contains the filtered indel VCF files produced by GATK using the tool Un...
This VCF file includes genotype calls for all 37 individuals included in the study at both variant a...
This is a VCF file generated using the GATK Unified Genotyper, then filtered as describe in the pape...
Directory containing the GATK output .vcf file from denovo-assembled reads of A. latilabris. Directo...
This is a .vcf file produced by calling variant genetic sites using samtools and bcftools. For each ...
Directory containing the GATK output .vcf file from denovo-assembled reads of O. amphimelas. Directo...
Vcf files were generated by aligning to a reference using BWA. Genotypes were called using GATK. Fil...
This file contains the variants that were genotyped using GATK3. A GATK hard-filter has been applied
Directory containing the GATK output .vcf file from reference-aligned reads of A. latilabris. Direct...
The L10_vcf_scaffold_1_to_2.tar.gz folder contains the compressed all-sites VCF file for L10 and the...
The L8_vcf_scaffold_1_to_2.tar.gz folder contains the compressed all-sites VCF file for L8 and the i...
The L10_vcf_scaffold_3_to_7.tar.gz folder contains the compressed all-sites VCF file for L10 and the...
The L8_vcf_scaffold_3_to_7.tar.gz folder contains the compressed all-sites VCF file for L8 and the i...
The L1_vcf.tar.gz folder contains the compressed all-sites VCF file for L1 and the index file for th...
The L9_vcf.tar.gz folder contains the compressed all-sites VCF file for L9 and the index file for th...
The indel_vcf.tar.gz folder contains the filtered indel VCF files produced by GATK using the tool Un...
This VCF file includes genotype calls for all 37 individuals included in the study at both variant a...
This is a VCF file generated using the GATK Unified Genotyper, then filtered as describe in the pape...
Directory containing the GATK output .vcf file from denovo-assembled reads of A. latilabris. Directo...
This is a .vcf file produced by calling variant genetic sites using samtools and bcftools. For each ...
Directory containing the GATK output .vcf file from denovo-assembled reads of O. amphimelas. Directo...
Vcf files were generated by aligning to a reference using BWA. Genotypes were called using GATK. Fil...
This file contains the variants that were genotyped using GATK3. A GATK hard-filter has been applied
Directory containing the GATK output .vcf file from reference-aligned reads of A. latilabris. Direct...
DOI
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