The indel_vcf.tar.gz folder contains the filtered indel VCF files produced by GATK using the tool UnifiedGenotyper. There is a VCF file for each lineage (L1, L4, L5, L7, L8, L9 and L10). The VCF files are named according to the Lineages (e.g., the VCF file called L5_filtered_indel_final.recode.vcf contains the indels for L5
The compressed file is germline mutations (SNPs and indels) of 197 CMTs and 185 normal samples calle...
Vcf files were generated by aligning to a reference using BWA. Genotypes were called using GATK. F...
Minor update to remove algorithm specific dependancies when parsing VCF files. This should make Ann...
The indel_vcf.tar.gz folder contains the filtered indel VCF files produced by GATK using the tool Un...
The L1_vcf.tar.gz folder contains the compressed all-sites VCF file for L1 and the index file for th...
The L9_vcf.tar.gz folder contains the compressed all-sites VCF file for L9 and the index file for th...
<div>Indel calls in VCF 4.1 format.</div><div><br></div><div>File: Schizosaccharomyces-pombe-indels....
The L5_vcf_scaffold_1_to_2.tar.gz folder contains the compressed all-sites VCF file for L5 and the i...
The L10_vcf_scaffold_3_to_7.tar.gz folder contains the compressed all-sites VCF file for L10 and the...
The L8_vcf_scaffold_3_to_7.tar.gz folder contains the compressed all-sites VCF file for L8 and the i...
The L10_vcf_scaffold_1_to_2.tar.gz folder contains the compressed all-sites VCF file for L10 and the...
The L8_vcf_scaffold_1_to_2.tar.gz folder contains the compressed all-sites VCF file for L8 and the i...
This file contains the variants that were genotyped using GATK3. A GATK hard-filter has been applied
Sample list and characteristics, imputed and non imputed vcf files. "h2dom.tar.gz" contains 3 files:...
Vcf files were generated by aligning to a reference using BWA. Genotypes were called using GATK. Fil...
The compressed file is germline mutations (SNPs and indels) of 197 CMTs and 185 normal samples calle...
Vcf files were generated by aligning to a reference using BWA. Genotypes were called using GATK. F...
Minor update to remove algorithm specific dependancies when parsing VCF files. This should make Ann...
The indel_vcf.tar.gz folder contains the filtered indel VCF files produced by GATK using the tool Un...
The L1_vcf.tar.gz folder contains the compressed all-sites VCF file for L1 and the index file for th...
The L9_vcf.tar.gz folder contains the compressed all-sites VCF file for L9 and the index file for th...
<div>Indel calls in VCF 4.1 format.</div><div><br></div><div>File: Schizosaccharomyces-pombe-indels....
The L5_vcf_scaffold_1_to_2.tar.gz folder contains the compressed all-sites VCF file for L5 and the i...
The L10_vcf_scaffold_3_to_7.tar.gz folder contains the compressed all-sites VCF file for L10 and the...
The L8_vcf_scaffold_3_to_7.tar.gz folder contains the compressed all-sites VCF file for L8 and the i...
The L10_vcf_scaffold_1_to_2.tar.gz folder contains the compressed all-sites VCF file for L10 and the...
The L8_vcf_scaffold_1_to_2.tar.gz folder contains the compressed all-sites VCF file for L8 and the i...
This file contains the variants that were genotyped using GATK3. A GATK hard-filter has been applied
Sample list and characteristics, imputed and non imputed vcf files. "h2dom.tar.gz" contains 3 files:...
Vcf files were generated by aligning to a reference using BWA. Genotypes were called using GATK. Fil...
The compressed file is germline mutations (SNPs and indels) of 197 CMTs and 185 normal samples calle...
Vcf files were generated by aligning to a reference using BWA. Genotypes were called using GATK. F...
Minor update to remove algorithm specific dependancies when parsing VCF files. This should make Ann...
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