This is a VCF file generated using the GATK Unified Genotyper, then filtered as describe in the paper. The PL field provides the phred-scaled and normalized genotype probabilities produced using the GATK model
vcf including SNPs on all chromosomes, and allele frequency estimates. See README file for more info...
These files contain sites with a high posterior probability (> 0.8) of being polymorphic in the 8-sa...
VCF file containing filtered polymorphic SNPs from 2bRAD sequencing. The file contains the genotypes...
Contains three genotype files (VCF) using either all twelve outcrossing populations, all eight selfi...
This VCF file includes genotype calls for all 37 individuals included in the study at both variant a...
This text file contains the filtered genetic data (SNP set) in variant call format (vcf). This inclu...
Compressed (tgz) Vcf file containing a subset of high quality biallelic variant filtered out from th...
Genotype likelihoods in vcf file format for the full data set including all 621 individuals
Genotype likelihoods in vcf file format for the reduced data set without seedlings, 137 individuals
Final GBS dataset used for population genetic inferences (.vcf) and its associated information for e...
Compressed vcf (variant call format) file containing the genetic data for the 206,047 single nucleot...
This file contains the variants that were genotyped using GATK3. A GATK hard-filter has been applied
Variant Call Format file (GZipped) for individuals used for genotype-phenotype associations. Sample ...
The compressed file is germline mutations (SNPs and indels) of 197 CMTs and 185 normal samples calle...
Annotated VCF file containing allele frequency and read depths of the 14 samples described in Bergla...
vcf including SNPs on all chromosomes, and allele frequency estimates. See README file for more info...
These files contain sites with a high posterior probability (> 0.8) of being polymorphic in the 8-sa...
VCF file containing filtered polymorphic SNPs from 2bRAD sequencing. The file contains the genotypes...
Contains three genotype files (VCF) using either all twelve outcrossing populations, all eight selfi...
This VCF file includes genotype calls for all 37 individuals included in the study at both variant a...
This text file contains the filtered genetic data (SNP set) in variant call format (vcf). This inclu...
Compressed (tgz) Vcf file containing a subset of high quality biallelic variant filtered out from th...
Genotype likelihoods in vcf file format for the full data set including all 621 individuals
Genotype likelihoods in vcf file format for the reduced data set without seedlings, 137 individuals
Final GBS dataset used for population genetic inferences (.vcf) and its associated information for e...
Compressed vcf (variant call format) file containing the genetic data for the 206,047 single nucleot...
This file contains the variants that were genotyped using GATK3. A GATK hard-filter has been applied
Variant Call Format file (GZipped) for individuals used for genotype-phenotype associations. Sample ...
The compressed file is germline mutations (SNPs and indels) of 197 CMTs and 185 normal samples calle...
Annotated VCF file containing allele frequency and read depths of the 14 samples described in Bergla...
vcf including SNPs on all chromosomes, and allele frequency estimates. See README file for more info...
These files contain sites with a high posterior probability (> 0.8) of being polymorphic in the 8-sa...
VCF file containing filtered polymorphic SNPs from 2bRAD sequencing. The file contains the genotypes...
DOI
Add to ORKG