perl script to determine if a call in the 12, 48 or 96 file is present in the 0 file and if it is it determines the coverage at that position. The output is the average coverage per snp positio
Zipped set of scripts, sample input and sample output files of programs used to design SNPs to disti...
Script to count unique sequences from fast input file, reverse complementing if necessary so forward...
The sequencing depth files generated by Samtools. The files were used to calculate the total number ...
perl script to determine if a call in the 12, 48 or 96 file is present in the 0 file and if it is it...
a Perl script for counting the number loci at different tolerance levels (output a txt file
Perl script to calculate the rDNA unit coverage from a sequence read dataset and to estimate the num...
a Perl script for filtering out sequences with no read (coverage draw from a poisson distribution
perl script to determine how many genotype calls within the same individual are the same as the 0 ho...
This Perl program takes a tab separated file holding G4 starting and ending locations as input and c...
This scripts identifies for each genome if certain regions are covered much higher than the genome-w...
This perl script computes the GenomeComposition.txt file that reports the number of synonymous, nons...
a perl script for summarizing the number of individuals for each locus (output in a txt file
Column 1 is the name of the reference contig. Column 2, the length of the reference. Column 3 and af...
This perl code calculates the stats of the data produced by Yoshizawa_etal_simuPOP_code.py. Further ...
a Perl script for generating phylip formatted sequence files with two tolerance levels (as the numbe...
Zipped set of scripts, sample input and sample output files of programs used to design SNPs to disti...
Script to count unique sequences from fast input file, reverse complementing if necessary so forward...
The sequencing depth files generated by Samtools. The files were used to calculate the total number ...
perl script to determine if a call in the 12, 48 or 96 file is present in the 0 file and if it is it...
a Perl script for counting the number loci at different tolerance levels (output a txt file
Perl script to calculate the rDNA unit coverage from a sequence read dataset and to estimate the num...
a Perl script for filtering out sequences with no read (coverage draw from a poisson distribution
perl script to determine how many genotype calls within the same individual are the same as the 0 ho...
This Perl program takes a tab separated file holding G4 starting and ending locations as input and c...
This scripts identifies for each genome if certain regions are covered much higher than the genome-w...
This perl script computes the GenomeComposition.txt file that reports the number of synonymous, nons...
a perl script for summarizing the number of individuals for each locus (output in a txt file
Column 1 is the name of the reference contig. Column 2, the length of the reference. Column 3 and af...
This perl code calculates the stats of the data produced by Yoshizawa_etal_simuPOP_code.py. Further ...
a Perl script for generating phylip formatted sequence files with two tolerance levels (as the numbe...
Zipped set of scripts, sample input and sample output files of programs used to design SNPs to disti...
Script to count unique sequences from fast input file, reverse complementing if necessary so forward...
The sequencing depth files generated by Samtools. The files were used to calculate the total number ...
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