Compare_Stacks_vs_AftrRAD

Perl script to compare AftrRAD loci to Stacks loci. Requires a series of output files that are listed in a comment at the beginning of the script. Note that this script must be run prior to running Compare_PyRAD_vs_AftrRAD.pl. Also note that both of these scripts are starting points for analysis, and that any loci identified as not shared among programs should be double-checked manually. For questions regarding these scripts, visit the AftrRAD Google group